Variant report

Variant	rs13188583
Chromosome Location	chr5:44533425-44533426
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:44532635..44535174-chr5:44537997..44539595,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1004720	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512853	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10512855	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13158765	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13158953	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13160481	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13160899	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13166702	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13169538	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13171351	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13176611	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13176804	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13179393	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13179960	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13182739	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13183252	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13184756	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13189872	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1482676	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16901855	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16901879	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16901889	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16901892	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2062140	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2128437	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34031522	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34057718	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34110145	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34180349	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34277429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34414216	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34439572	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34462071	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34512854	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34611602	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34617631	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34640244	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34810292	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35074718	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35108601	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35202030	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35262233	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35321661	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35391530	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35483918	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35517954	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35530450	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35544349	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35805621	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35947880	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55880927	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56105608	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58626038	0.83[EUR][1000 genomes]
rs60999383	1.00[ASN][1000 genomes]
rs66479031	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66570818	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66704172	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66815332	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67771916	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72748094	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72752187	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830277	chr5:44383402-44566881	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44520200-44537000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:44526000-44539800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:44528200-44544800	Weak transcription	Fetal Lung	lung
4	chr5:44532000-44534000	Enhancers	Hela-S3	cervix
5	chr5:44532800-44533600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:44533400-44533800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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