Variant report

Variant	rs34512854
Chromosome Location	chr5:44539753-44539754
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:44538904..44540279-chr5:44568353..44569227,4	MCF-7	breast:
2	chr5:44538575..44540262-chr5:44568240..44569247,12	MCF-7	breast:
3	chr5:44539237..44540214-chr5:44568240..44569147,5	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1004720	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512853	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10512855	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13158765	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13158953	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13160481	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13160899	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13166702	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13169538	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13171351	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13176611	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13176804	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13179393	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13179960	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13182739	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13183252	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13184756	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13188583	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13189872	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1482676	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16901855	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16901879	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16901889	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16901892	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2062140	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2128437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34031522	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34057718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34110145	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34180349	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34277429	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34414216	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34439572	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34462071	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34611602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34617631	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34640244	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34810292	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35074718	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35108601	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35202030	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35262233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35321661	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35391530	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35483918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35517954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35530450	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35544349	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35805621	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35947880	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55880927	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56105608	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58626038	0.88[EUR][1000 genomes]
rs60999383	1.00[ASN][1000 genomes]
rs66479031	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66570818	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66704172	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66815332	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67771916	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72748094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72752187	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830277	chr5:44383402-44566881	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44526000-44539800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:44528200-44544800	Weak transcription	Fetal Lung	lung
3	chr5:44538800-44540000	Flanking Active TSS	Hela-S3	cervix
4	chr5:44539000-44540000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
5	chr5:44539000-44540000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
6	chr5:44539200-44540000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:44539200-44540000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:44539400-44539800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:44539400-44540000	Enhancers	Fetal Muscle Leg	muscle
10	chr5:44539600-44539800	Bivalent Enhancer	NHDF-Ad	bronchial
11	chr5:44539600-44540000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:44539600-44540000	Enhancers	Psoas Muscle	Psoas

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