Variant report

Variant	rs58626038
Chromosome Location	chr5:44561739-44561740
allele	-/G/GTTGTT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1004720	0.85[EUR][1000 genomes]
rs13158765	0.81[EUR][1000 genomes]
rs13166702	0.88[EUR][1000 genomes]
rs13169538	0.88[EUR][1000 genomes]
rs13176611	0.88[EUR][1000 genomes]
rs13176804	0.88[EUR][1000 genomes]
rs13182739	0.86[EUR][1000 genomes]
rs13188583	0.83[EUR][1000 genomes]
rs13189872	0.83[EUR][1000 genomes]
rs2128437	0.85[EUR][1000 genomes]
rs34057718	0.85[EUR][1000 genomes]
rs34110145	0.81[EUR][1000 genomes]
rs34180349	0.81[EUR][1000 genomes]
rs34277429	0.88[EUR][1000 genomes]
rs34462071	0.81[EUR][1000 genomes]
rs34512854	0.88[EUR][1000 genomes]
rs34611602	0.83[EUR][1000 genomes]
rs35074718	0.81[EUR][1000 genomes]
rs35262233	0.85[EUR][1000 genomes]
rs35321661	0.88[EUR][1000 genomes]
rs35483918	0.88[EUR][1000 genomes]
rs35517954	0.88[EUR][1000 genomes]
rs35805621	0.83[EUR][1000 genomes]
rs66479031	0.81[EUR][1000 genomes]
rs66570818	0.85[EUR][1000 genomes]
rs66815332	0.88[EUR][1000 genomes]
rs67771916	0.88[EUR][1000 genomes]
rs72748094	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830277	chr5:44383402-44566881	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830278	chr5:44540863-44713312	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44561400-44565400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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