Variant report

Variant	rs13179960
Chromosome Location	chr5:44602173-44602174
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1004720	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512855	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs13158765	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13158953	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13166702	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13169538	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13176611	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13176804	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13179393	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13182739	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13183252	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13184756	1.00[CEU][hapmap]
rs13188583	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13189872	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16901889	1.00[CEU][hapmap]
rs16901892	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs2128437	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34057718	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34110145	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34180349	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34277429	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34462071	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34512854	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34611602	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35074718	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35202030	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35262233	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35321661	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35483918	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35517954	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35805621	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56105608	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60999383	1.00[ASN][1000 genomes]
rs66479031	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66570818	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66815332	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67771916	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72748094	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72752187	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830278	chr5:44540863-44713312	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44597800-44603800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links