Variant report
| Variant | rs60999383 |
|---|---|
| Chromosome Location | chr5:44656783-44656784 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs1004720 | 1.00[ASN][1000 genomes] |
| rs13158765 | 1.00[ASN][1000 genomes] |
| rs13158953 | 1.00[ASN][1000 genomes] |
| rs13166702 | 1.00[ASN][1000 genomes] |
| rs13169538 | 1.00[ASN][1000 genomes] |
| rs13176611 | 1.00[ASN][1000 genomes] |
| rs13176804 | 1.00[ASN][1000 genomes] |
| rs13179393 | 1.00[ASN][1000 genomes] |
| rs13179960 | 1.00[ASN][1000 genomes] |
| rs13182739 | 1.00[ASN][1000 genomes] |
| rs13183252 | 1.00[ASN][1000 genomes] |
| rs13188583 | 1.00[ASN][1000 genomes] |
| rs13189872 | 1.00[ASN][1000 genomes] |
| rs2128437 | 1.00[ASN][1000 genomes] |
| rs34057718 | 1.00[ASN][1000 genomes] |
| rs34110145 | 1.00[ASN][1000 genomes] |
| rs34180349 | 1.00[ASN][1000 genomes] |
| rs34277429 | 1.00[ASN][1000 genomes] |
| rs34462071 | 1.00[ASN][1000 genomes] |
| rs34512854 | 1.00[ASN][1000 genomes] |
| rs34611602 | 1.00[ASN][1000 genomes] |
| rs35074718 | 1.00[ASN][1000 genomes] |
| rs35202030 | 1.00[ASN][1000 genomes] |
| rs35262233 | 1.00[ASN][1000 genomes] |
| rs35321661 | 1.00[ASN][1000 genomes] |
| rs35483918 | 1.00[ASN][1000 genomes] |
| rs35517954 | 1.00[ASN][1000 genomes] |
| rs35805621 | 1.00[ASN][1000 genomes] |
| rs56105608 | 1.00[ASN][1000 genomes] |
| rs66479031 | 1.00[ASN][1000 genomes] |
| rs66570818 | 1.00[ASN][1000 genomes] |
| rs66815332 | 1.00[ASN][1000 genomes] |
| rs67771916 | 1.00[ASN][1000 genomes] |
| rs72748094 | 1.00[ASN][1000 genomes] |
| rs72752187 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830278 | chr5:44540863-44713312 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv537742 | chr5:44620084-44664039 | Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| 3 | nsv880457 | chr5:44632008-44800665 | Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:44656200-44657000 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
