Variant report

Variant	rs16903274
Chromosome Location	chr5:36705058-36705059
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36704160..36706693-chr5:36714837..36716744,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55677187	1.00[AMR][1000 genomes]
rs55709771	1.00[AMR][1000 genomes]
rs60219552	1.00[AMR][1000 genomes]
rs73748870	1.00[AMR][1000 genomes]
rs73748877	1.00[AMR][1000 genomes]
rs73748880	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv880571	chr5:36675699-36710205	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36700200-36724200	Weak transcription	Primary T cells from cord blood	blood
2	chr5:36701400-36706600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:36701400-36706600	Weak transcription	Spleen	Spleen
4	chr5:36701400-36707000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:36701400-36707400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:36702800-36706000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr5:36702800-36707400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:36703000-36707400	Strong transcription	Primary B cells from peripheral blood	blood
9	chr5:36703000-36707600	Strong transcription	Primary B cells from cord blood	blood
10	chr5:36703200-36706800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:36703200-36707200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr5:36703400-36705400	Enhancers	K562	blood
13	chr5:36703400-36706200	Enhancers	Fetal Muscle Leg	muscle
14	chr5:36703600-36707600	Strong transcription	GM12878-XiMat	blood
15	chr5:36703800-36705200	Weak transcription	Left Ventricle	heart
16	chr5:36703800-36705400	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr5:36703800-36707400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr5:36704000-36705400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr5:36704000-36705400	Weak transcription	Adipose Nuclei	Adipose
20	chr5:36704000-36705400	Weak transcription	Right Ventricle	heart
21	chr5:36704000-36705800	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr5:36704000-36711000	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr5:36704200-36705200	Enhancers	Colon Smooth Muscle	Colon
24	chr5:36704600-36705800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr5:36704800-36705600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr5:36705000-36705400	Enhancers	Fetal Heart	heart
27	chr5:36705000-36705600	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr5:36705000-36705600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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