Variant report

Variant	rs73748870
Chromosome Location	chr5:36724901-36724902
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36722920..36725168-chr5:36726179..36730650,3	MCF-7	breast:
2	chr5:36722181..36727364-chr5:36874838..36878996,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164190	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16903274	1.00[AMR][1000 genomes]
rs55677187	1.00[AMR][1000 genomes]
rs55709771	1.00[AMR][1000 genomes]
rs59505293	1.00[AMR][1000 genomes]
rs60219552	1.00[AMR][1000 genomes]
rs73748877	1.00[AMR][1000 genomes]
rs73748880	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36722000-36725800	Enhancers	Fetal Muscle Leg	muscle
2	chr5:36723800-36725400	Flanking Active TSS	Primary B cells from cord blood	blood
3	chr5:36724000-36725400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr5:36724000-36725400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr5:36724000-36725600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr5:36724000-36725800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr5:36724200-36725200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr5:36724200-36725400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
9	chr5:36724200-36725400	Flanking Active TSS	Primary B cells from peripheral blood	blood
10	chr5:36724200-36725400	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr5:36724200-36725400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:36724200-36725400	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr5:36724400-36725000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
14	chr5:36724400-36725000	Weak transcription	Fetal Thymus	thymus
15	chr5:36724400-36725400	Active TSS	Primary T cells from cord blood	blood
16	chr5:36724400-36725600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr5:36724400-36726200	Weak transcription	Spleen	Spleen
18	chr5:36724600-36725200	Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr5:36724600-36725400	Active TSS	Primary T helper naive cells from peripheral blood	blood
20	chr5:36724600-36725400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
21	chr5:36724600-36725400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
22	chr5:36724600-36725400	Active TSS	Primary T killer memory cells from peripheral blood	blood
23	chr5:36724600-36725400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
24	chr5:36724600-36725400	Active TSS	Duodenum Mucosa	Duodenum
25	chr5:36724600-36725600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
26	chr5:36724800-36725000	Active TSS	GM12878-XiMat	blood
27	chr5:36724800-36725000	Active TSS	K562	blood
28	chr5:36724800-36725200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:36724800-36725200	Active TSS	Primary T helper cells fromperipheralblood	blood
30	chr5:36724800-36725200	Active TSS	Adipose Nuclei	Adipose
31	chr5:36724800-36725200	Active TSS	Brain Hippocampus Middle	brain
32	chr5:36724800-36725200	Active TSS	Colonic Mucosa	Colon
33	chr5:36724800-36725200	Active TSS	Thymus	Thymus
34	chr5:36724800-36725200	Enhancers	Hela-S3	cervix
35	chr5:36724800-36725400	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr5:36724800-36725400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr5:36724800-36725400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
38	chr5:36724800-36725400	Active TSS	Rectal Mucosa Donor 31	rectum
39	chr5:36724800-36725600	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr5:36724800-36725800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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