Variant report

Variant	rs55709771
Chromosome Location	chr5:36775144-36775145
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16903274	1.00[AMR][1000 genomes]
rs55677187	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59505293	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60219552	1.00[AMR][1000 genomes]
rs73748870	1.00[AMR][1000 genomes]
rs73748877	1.00[AMR][1000 genomes]
rs73748880	1.00[AMR][1000 genomes]
rs73750913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750916	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36770600-36777000	Weak transcription	Stomach Mucosa	stomach
2	chr5:36773800-36777200	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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