Variant report

Variant	rs16903943
Chromosome Location	chr8:130015792-130015793
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1372447	0.83[AFR][1000 genomes]
rs16903942	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16903944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16903945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470689	0.92[AFR][1000 genomes]
rs6470690	1.00[EUR][1000 genomes]
rs7003332	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7014071	1.00[EUR][1000 genomes]
rs7018315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815465	0.91[AFR][1000 genomes]
rs7815766	1.00[AFR][1000 genomes]
rs7815873	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437633	chr8:130014200-130022257	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130011400-130016000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:130011800-130017200	Weak transcription	Osteobl	bone
3	chr8:130012000-130017000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:130012000-130017200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:130012200-130017200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:130013400-130016400	Enhancers	Fetal Muscle Leg	muscle
7	chr8:130014600-130016000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr8:130014600-130017000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr8:130014600-130017200	Weak transcription	Fetal Stomach	stomach
10	chr8:130015000-130017000	Weak transcription	HSMMtube	muscle
11	chr8:130015400-130017000	Weak transcription	HSMM	muscle
12	chr8:130015400-130017200	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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