Variant report

Variant	rs7014071
Chromosome Location	chr8:130097929-130097930
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11996876	0.90[AFR][1000 genomes]
rs16903942	0.92[EUR][1000 genomes]
rs16903943	1.00[EUR][1000 genomes]
rs16903944	1.00[EUR][1000 genomes]
rs16903945	1.00[EUR][1000 genomes]
rs56853677	0.90[AFR][1000 genomes]
rs6470690	1.00[EUR][1000 genomes]
rs7003332	1.00[EUR][1000 genomes]
rs7018315	1.00[EUR][1000 genomes]
rs72728800	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891442	chr8:130016499-130130604	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891444	chr8:130024642-130130604	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130085600-130115200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:130090600-130099800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:130094800-130112000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:130096400-130100000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr8:130096600-130100000	Strong transcription	Dnd41	blood
6	chr8:130097200-130098200	Enhancers	Fetal Stomach	stomach
7	chr8:130097600-130098000	Enhancers	Fetal Kidney	kidney
8	chr8:130097600-130098000	Enhancers	Fetal Thymus	thymus
9	chr8:130097800-130098200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:130097800-130098200	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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