Variant report

Variant	rs72728800
Chromosome Location	chr8:130070036-130070037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130066632..130068907-chr8:130069762..130071490,2	K562	blood:
2	chr8:130061308..130064067-chr8:130069803..130071790,2	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10098250	0.88[EUR][1000 genomes]
rs10956458	0.89[EUR][1000 genomes]
rs11774875	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11777036	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11990860	0.91[EUR][1000 genomes]
rs11996876	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11997291	0.91[EUR][1000 genomes]
rs12334809	0.91[EUR][1000 genomes]
rs1372441	0.89[EUR][1000 genomes]
rs1372444	0.89[EUR][1000 genomes]
rs1372452	0.91[EUR][1000 genomes]
rs1441988	0.85[EUR][1000 genomes]
rs1441989	0.83[EUR][1000 genomes]
rs2197111	0.89[EUR][1000 genomes]
rs34709271	0.82[AMR][1000 genomes]
rs3957251	0.88[EUR][1000 genomes]
rs4354273	0.91[EUR][1000 genomes]
rs4443626	0.91[EUR][1000 genomes]
rs4493879	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4733534	0.83[EUR][1000 genomes]
rs55708957	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55801260	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55802114	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55836025	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55865674	0.91[EUR][1000 genomes]
rs55870212	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55925307	0.91[EUR][1000 genomes]
rs56000240	0.91[EUR][1000 genomes]
rs56065964	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56099035	0.82[AMR][1000 genomes]
rs56100663	0.97[EUR][1000 genomes]
rs56308035	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56396127	0.91[EUR][1000 genomes]
rs56853677	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57967261	0.91[EUR][1000 genomes]
rs62525662	0.89[EUR][1000 genomes]
rs62525664	0.91[EUR][1000 genomes]
rs62525667	0.91[EUR][1000 genomes]
rs62525668	0.91[EUR][1000 genomes]
rs62525669	0.91[EUR][1000 genomes]
rs62525670	0.90[EUR][1000 genomes]
rs62525671	0.91[EUR][1000 genomes]
rs62525713	0.91[EUR][1000 genomes]
rs62525715	0.91[EUR][1000 genomes]
rs62525716	0.91[EUR][1000 genomes]
rs62525721	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62525724	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62525744	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62525745	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6470678	0.89[EUR][1000 genomes]
rs6470679	0.89[EUR][1000 genomes]
rs7001446	0.88[EUR][1000 genomes]
rs7014071	0.91[AFR][1000 genomes]
rs7018275	0.89[EUR][1000 genomes]
rs72730206	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72730211	0.82[AMR][1000 genomes]
rs766812	0.82[EUR][1000 genomes]
rs7817443	0.91[EUR][1000 genomes]
rs7827793	0.88[EUR][1000 genomes]
rs7833975	0.91[EUR][1000 genomes]
rs7835514	0.88[EUR][1000 genomes]
rs7835741	0.87[EUR][1000 genomes]
rs7839409	0.83[EUR][1000 genomes]
rs7844268	0.88[EUR][1000 genomes]
rs920621	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891442	chr8:130016499-130130604	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891444	chr8:130024642-130130604	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130061000-130071000	Weak transcription	Thymus	Thymus
2	chr8:130062200-130071000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:130062400-130071200	Weak transcription	Fetal Thymus	thymus
4	chr8:130068000-130073400	Genic enhancers	Dnd41	blood
5	chr8:130068400-130070200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links