Variant report

Variant	rs56099035
Chromosome Location	chr8:130143650-130143651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130142319..130144172-chr8:130152897..130155055,2	MCF-7	breast:
2	chr8:130141276..130144083-chr8:130203489..130205820,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11774875	0.93[AMR][1000 genomes]
rs11777036	0.93[AMR][1000 genomes]
rs11777951	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11784062	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11990860	0.90[AMR][1000 genomes]
rs11997291	0.90[AMR][1000 genomes]
rs34709271	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4354273	0.90[AMR][1000 genomes]
rs4418312	0.82[AMR][1000 genomes]
rs4443626	0.83[AMR][1000 genomes]
rs4493879	0.93[AMR][1000 genomes]
rs55708957	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55801260	0.86[AMR][1000 genomes]
rs55802114	0.88[AMR][1000 genomes]
rs55836025	0.86[AMR][1000 genomes]
rs55870212	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56000240	0.90[AMR][1000 genomes]
rs56065964	0.86[AMR][1000 genomes]
rs56308035	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62525671	0.83[AMR][1000 genomes]
rs62525713	0.90[AMR][1000 genomes]
rs62525715	0.90[AMR][1000 genomes]
rs62525716	0.90[AMR][1000 genomes]
rs62525721	0.93[AMR][1000 genomes]
rs62525724	0.93[AMR][1000 genomes]
rs62525744	0.88[AMR][1000 genomes]
rs62525745	0.93[AMR][1000 genomes]
rs72728800	0.82[AMR][1000 genomes]
rs72730206	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72730211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72730212	0.87[EUR][1000 genomes]
rs72730213	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72730215	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2761241	chr8:130139946-130146557	Genic enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv14496	chr8:130140866-130145246	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3480047	chr8:130140925-130145212	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv3480044	chr8:130140925-130145243	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3480046	chr8:130140936-130145232	Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3480045	chr8:130140959-130145212	Genic enhancers Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv2421834	chr8:130142678-130144526	Genic enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv442530	chr8:130142678-130144526	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv515068	chr8:130142970-130144114	Genic enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130126400-130160600	Weak transcription	Fetal Thymus	thymus
2	chr8:130143000-130146000	Strong transcription	Dnd41	blood

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