Variant report

Variant	rs56308035
Chromosome Location	chr8:130109547-130109548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10098250	0.82[EUR][1000 genomes]
rs10956458	0.83[EUR][1000 genomes]
rs11774875	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11777036	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11777951	0.84[AMR][1000 genomes]
rs11990860	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11996876	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11997291	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12334809	0.85[EUR][1000 genomes]
rs1372441	0.83[EUR][1000 genomes]
rs1372444	0.81[EUR][1000 genomes]
rs1372452	0.85[EUR][1000 genomes]
rs2197111	0.81[EUR][1000 genomes]
rs34709271	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3957251	0.82[EUR][1000 genomes]
rs4354273	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4443626	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4493879	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55708957	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55801260	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55802114	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55836025	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55865674	0.85[EUR][1000 genomes]
rs55870212	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55925307	0.85[EUR][1000 genomes]
rs56000240	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56065964	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56099035	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56100663	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56396127	0.85[EUR][1000 genomes]
rs56853677	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57967261	0.85[EUR][1000 genomes]
rs62525662	0.83[EUR][1000 genomes]
rs62525664	0.85[EUR][1000 genomes]
rs62525667	0.85[EUR][1000 genomes]
rs62525668	0.85[EUR][1000 genomes]
rs62525669	0.85[EUR][1000 genomes]
rs62525670	0.84[EUR][1000 genomes]
rs62525671	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62525713	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62525715	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62525716	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62525721	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62525724	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62525744	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62525745	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6470678	0.83[EUR][1000 genomes]
rs6470679	0.83[EUR][1000 genomes]
rs7018275	0.81[EUR][1000 genomes]
rs72728800	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72730206	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72730211	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72730213	0.84[AMR][1000 genomes]
rs72730215	0.84[AMR][1000 genomes]
rs7817443	0.85[EUR][1000 genomes]
rs7827793	0.82[EUR][1000 genomes]
rs7833975	0.85[EUR][1000 genomes]
rs7835514	0.82[EUR][1000 genomes]
rs7844268	0.82[EUR][1000 genomes]
rs920621	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891442	chr8:130016499-130130604	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891444	chr8:130024642-130130604	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130085600-130115200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:130094800-130112000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:130107000-130109600	Weak transcription	Fetal Thymus	thymus
4	chr8:130109000-130109600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr8:130109000-130109600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr8:130109400-130109800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr8:130109400-130110200	Genic enhancers	Dnd41	blood

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