Variant report

Variant	rs62525721
Chromosome Location	chr8:130079162-130079163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10098250	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10956458	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11774875	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11777036	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11777951	0.84[AMR][1000 genomes]
rs11990860	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11996876	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11997291	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12334809	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1372441	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1372444	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1372452	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1441988	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1441989	0.82[EUR][1000 genomes]
rs2197111	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34709271	0.87[AMR][1000 genomes]
rs3957251	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4354273	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4443626	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4493879	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4733534	0.82[EUR][1000 genomes]
rs55708957	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55801260	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55802114	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55836025	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55865674	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55870212	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55925307	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56000240	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56065964	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56099035	0.93[AMR][1000 genomes]
rs56100663	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56308035	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56396127	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56853677	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57967261	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62525662	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62525664	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62525667	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62525668	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62525669	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62525670	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62525671	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62525713	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62525715	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62525716	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62525724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62525744	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62525745	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6470678	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6470679	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7001446	0.87[EUR][1000 genomes]
rs7018275	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72728800	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72730206	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72730211	0.93[AMR][1000 genomes]
rs72730213	0.84[AMR][1000 genomes]
rs72730215	0.84[AMR][1000 genomes]
rs766812	0.81[EUR][1000 genomes]
rs7817443	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7827793	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7833975	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7835514	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7835741	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7839409	0.82[EUR][1000 genomes]
rs7844268	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs920621	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891442	chr8:130016499-130130604	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891444	chr8:130024642-130130604	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130072200-130080800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:130074200-130083400	Weak transcription	Thymus	Thymus
3	chr8:130074400-130081000	Weak transcription	HSMMtube	muscle
4	chr8:130075000-130079600	Weak transcription	Fetal Thymus	thymus
5	chr8:130077200-130080400	Weak transcription	Dnd41	blood
6	chr8:130078000-130081200	Enhancers	Ovary	ovary
7	chr8:130078000-130081800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr8:130078800-130079600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:130079000-130081200	Enhancers	Fetal Muscle Leg	muscle
10	chr8:130079000-130081400	Enhancers	Adipose Nuclei	Adipose
11	chr8:130079000-130081800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr8:130079000-130082800	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links