Variant report

Variant	rs62525724
Chromosome Location	chr8:130085034-130085035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYC-12	chr8:130084952-130085449	NONHSAT129105

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10098250	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10956458	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11774875	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11777036	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11777951	0.84[AMR][1000 genomes]
rs11990860	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11996876	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11997291	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12334809	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1372441	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1372444	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1372452	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1441988	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1441989	0.81[EUR][1000 genomes]
rs2197111	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34709271	0.87[AMR][1000 genomes]
rs3957251	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4354273	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4443626	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4493879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4733534	0.81[EUR][1000 genomes]
rs55708957	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55801260	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55802114	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55836025	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55865674	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55870212	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55925307	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56000240	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56065964	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56099035	0.93[AMR][1000 genomes]
rs56100663	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56308035	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56396127	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56853677	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57967261	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62525662	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62525664	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62525667	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62525668	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62525669	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62525670	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62525671	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62525713	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62525715	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62525716	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62525721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62525744	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62525745	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6470678	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6470679	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7001446	0.86[EUR][1000 genomes]
rs7018275	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72728800	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72730206	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72730211	0.93[AMR][1000 genomes]
rs72730213	0.84[AMR][1000 genomes]
rs72730215	0.84[AMR][1000 genomes]
rs7817443	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7827793	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7833975	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7835514	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7835741	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7839409	0.81[EUR][1000 genomes]
rs7844268	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs920621	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891442	chr8:130016499-130130604	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891444	chr8:130024642-130130604	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130081200-130087000	Weak transcription	Right Atrium	heart
2	chr8:130082000-130091400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr8:130082600-130085200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:130082800-130087200	Weak transcription	Ovary	ovary
5	chr8:130083000-130086200	ZNF genes & repeats	Dnd41	blood
6	chr8:130083800-130085600	Enhancers	NHEK	skin
7	chr8:130084000-130085200	Weak transcription	HMEC	breast
8	chr8:130084000-130087200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:130084200-130085800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:130084200-130087000	Weak transcription	Thymus	Thymus
11	chr8:130084200-130087200	Weak transcription	Fetal Stomach	stomach
12	chr8:130084200-130087600	Weak transcription	Adipose Nuclei	Adipose
13	chr8:130084600-130085400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:130084600-130085800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr8:130084800-130085200	Weak transcription	NHDF-Ad	bronchial
16	chr8:130084800-130087000	Weak transcription	Fetal Thymus	thymus

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