Variant report

Variant	rs7815465
Chromosome Location	chr8:130079937-130079938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16903943	0.91[AFR][1000 genomes]
rs16903944	0.91[AFR][1000 genomes]
rs16903945	0.91[AFR][1000 genomes]
rs6470689	0.84[AFR][1000 genomes]
rs7018315	0.91[AFR][1000 genomes]
rs7815766	0.91[AFR][1000 genomes]
rs7815873	0.91[AFR][1000 genomes]
rs7843333	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891442	chr8:130016499-130130604	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891444	chr8:130024642-130130604	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130072200-130080800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:130074200-130083400	Weak transcription	Thymus	Thymus
3	chr8:130074400-130081000	Weak transcription	HSMMtube	muscle
4	chr8:130077200-130080400	Weak transcription	Dnd41	blood
5	chr8:130078000-130081200	Enhancers	Ovary	ovary
6	chr8:130078000-130081800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr8:130079000-130081200	Enhancers	Fetal Muscle Leg	muscle
8	chr8:130079000-130081400	Enhancers	Adipose Nuclei	Adipose
9	chr8:130079000-130081800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr8:130079000-130082800	Enhancers	Fetal Stomach	stomach
11	chr8:130079200-130080000	Enhancers	Brain Cingulate Gyrus	brain
12	chr8:130079200-130080000	Enhancers	Stomach Smooth Muscle	stomach
13	chr8:130079200-130081400	Enhancers	Fetal Lung	lung
14	chr8:130079200-130081600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:130079200-130081800	Enhancers	NHDF-Ad	bronchial
16	chr8:130079400-130080400	Enhancers	Fetal Brain Male	brain
17	chr8:130079400-130084000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:130079600-130080200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:130079600-130080400	Enhancers	Fetal Thymus	thymus
20	chr8:130079600-130080600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr8:130079800-130080200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:130079800-130080600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr8:130079800-130080800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr8:130079800-130080800	Weak transcription	Osteobl	bone

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