Variant report

Variant	rs16904092
Chromosome Location	chr8:130501930-130501931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10111801	0.82[JPT][hapmap]
rs12676467	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16904089	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16904101	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2894474	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73391892	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73391902	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73393962	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015611	chr8:130449321-130502086	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130490200-130503400	Weak transcription	Dnd41	blood
2	chr8:130497200-130504200	Weak transcription	Thymus	Thymus
3	chr8:130497600-130503600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:130500000-130502600	Weak transcription	NH-A	brain
5	chr8:130500800-130503400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr8:130501000-130502400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:130501200-130502000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr8:130501200-130502000	Enhancers	Adipose Nuclei	Adipose
9	chr8:130501400-130502600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr8:130501400-130502800	Strong transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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