Variant report

Variant	rs16904133
Chromosome Location	chr8:130653461-130653462
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10092679	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10101342	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1077236	0.90[CEU][hapmap];0.83[CHB][hapmap];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16893247	0.90[CEU][hapmap]
rs16904135	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16904140	0.91[CEU][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs28572791	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4295627	1.00[CEU][hapmap];0.87[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4367505	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4498505	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5022680	0.88[CEU][hapmap];0.86[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6470745	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs68055908	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6985032	1.00[CEU][hapmap];0.88[CHB][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612230	chr8:130624121-130661901	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130651000-130654400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr8:130651000-130655400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:130651400-130654800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:130651600-130654600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:130652600-130653600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr8:130652600-130656000	Weak transcription	Fetal Lung	lung
7	chr8:130653000-130653800	Enhancers	Brain Angular Gyrus	brain
8	chr8:130653000-130654000	Weak transcription	Fetal Muscle Leg	muscle
9	chr8:130653200-130653600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr8:130653400-130654800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links