Variant report

Variant	rs16904140
Chromosome Location	chr8:130665643-130665644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10092679	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10101342	0.89[ASW][hapmap];0.92[CEU][hapmap];0.94[GIH][hapmap];0.87[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1077236	0.84[CEU][hapmap]
rs16893247	0.84[CEU][hapmap]
rs16904133	0.91[CEU][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16904135	0.91[CEU][hapmap];0.85[AMR][1000 genomes]
rs28572791	0.82[EUR][1000 genomes]
rs4295627	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4367505	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4498505	0.92[CEU][hapmap];0.85[AMR][1000 genomes]
rs5022680	0.83[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6470745	0.89[ASW][hapmap];0.92[CEU][hapmap];0.94[GIH][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs68055908	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6985032	0.92[CEU][hapmap];0.88[GIH][hapmap];0.82[LWK][hapmap];0.88[MEX][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891446	chr8:130656205-130710638	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130662200-130667200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:130664400-130667600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr8:130665600-130665800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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