Variant report

Variant	rs68055908
Chromosome Location	chr8:130667115-130667116
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10092679	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10101342	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1077236	0.96[EUR][1000 genomes]
rs16904133	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16904135	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16904140	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs28572791	0.92[EUR][1000 genomes]
rs4295627	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4367505	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4498505	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs5022680	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6470745	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6985032	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891446	chr8:130656205-130710638	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130662200-130667200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:130664400-130667600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr8:130666200-130668600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:130666800-130668600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:130667000-130668000	Enhancers	Dnd41	blood
6	chr8:130667000-130668600	Enhancers	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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