Variant report

Variant	rs16905416
Chromosome Location	chr8:87338202-87338203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:87331635..87334069-chr8:87336404..87338219,2	K562	blood:
2	chr8:87335716..87338242-chr8:87354114..87356296,2	MCF-7	breast:
3	chr8:87338119..87339935-chr8:87342418..87344474,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000123124	Chromatin interaction
ENSG00000254231	Chromatin interaction
ENSG00000164893	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1865864	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34473043	1.00[ASN][1000 genomes]
rs35154764	1.00[ASN][1000 genomes]
rs35584329	1.00[ASN][1000 genomes]
rs4332109	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4443643	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4451291	1.00[CHB][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4520141	1.00[ASN][1000 genomes]
rs57775185	1.00[ASN][1000 genomes]
rs57899573	1.00[ASN][1000 genomes]
rs58223572	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59329724	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59334514	1.00[ASN][1000 genomes]
rs59667025	1.00[ASN][1000 genomes]
rs59686387	1.00[ASN][1000 genomes]
rs60371751	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61254300	1.00[ASN][1000 genomes]
rs61291838	1.00[ASN][1000 genomes]
rs66948125	1.00[ASN][1000 genomes]
rs67671364	1.00[ASN][1000 genomes]
rs68064728	1.00[ASN][1000 genomes]
rs6982851	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6988382	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7008034	1.00[CHB][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7011900	1.00[ASN][1000 genomes]
rs7015160	1.00[CHB][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7018101	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73254767	1.00[ASN][1000 genomes]
rs73257052	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73257083	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73257093	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73257101	1.00[ASN][1000 genomes]
rs73260973	1.00[ASN][1000 genomes]
rs73260982	1.00[ASN][1000 genomes]
rs73262907	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73262914	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73262917	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73265786	1.00[ASN][1000 genomes]
rs73268833	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73268850	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73268853	1.00[ASN][1000 genomes]
rs73268855	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73268878	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73268893	1.00[ASN][1000 genomes]
rs73271028	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73271033	1.00[ASN][1000 genomes]
rs73271467	1.00[ASN][1000 genomes]
rs73271470	1.00[ASN][1000 genomes]
rs73271472	1.00[ASN][1000 genomes]
rs73271477	1.00[ASN][1000 genomes]
rs73271478	1.00[ASN][1000 genomes]
rs73271482	1.00[ASN][1000 genomes]
rs73271490	1.00[ASN][1000 genomes]
rs73271496	1.00[ASN][1000 genomes]
rs73271500	1.00[ASN][1000 genomes]
rs73271502	1.00[ASN][1000 genomes]
rs73273117	1.00[ASN][1000 genomes]
rs73273136	1.00[ASN][1000 genomes]
rs73273139	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73273140	1.00[ASN][1000 genomes]
rs73273151	1.00[ASN][1000 genomes]
rs73273168	1.00[ASN][1000 genomes]
rs73273405	1.00[ASN][1000 genomes]
rs73273409	1.00[ASN][1000 genomes]
rs73273414	1.00[ASN][1000 genomes]
rs73273418	1.00[ASN][1000 genomes]
rs73273420	1.00[ASN][1000 genomes]
rs73273428	1.00[ASN][1000 genomes]
rs7462792	1.00[ASN][1000 genomes]
rs7819168	0.87[YRI][hapmap]
rs7822617	1.00[ASN][1000 genomes]
rs7825890	1.00[ASN][1000 genomes]
rs7833543	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529563	chr8:86467090-87381984	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv429926	chr8:87161695-87429872	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	esv3360246	chr8:87200232-87419244	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1017535	chr8:87261702-87367934	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87334400-87338800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:87334800-87346400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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