Variant report

Variant	rs73271467
Chromosome Location	chr8:87274074-87274075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:87272517..87276008-chr8:87285333..87287881,3	MCF-7	breast:
2	chr8:87268857..87273498-chr8:87273591..87278525,6	MCF-7	breast:
3	chr8:87271961..87274632-chr8:87289481..87292404,2	MCF-7	breast:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs16905416	1.00[ASN][1000 genomes]
rs1865864	1.00[ASN][1000 genomes]
rs4332109	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4443643	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4451291	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4520141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57775185	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57899573	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58223572	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59329724	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59334514	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59667025	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59686387	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60371751	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61254300	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61291838	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471315	0.84[EUR][1000 genomes]
rs6982851	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988382	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008034	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7015160	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7018101	1.00[ASN][1000 genomes]
rs73254767	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73257052	1.00[ASN][1000 genomes]
rs73257083	1.00[ASN][1000 genomes]
rs73257093	1.00[ASN][1000 genomes]
rs73257101	1.00[ASN][1000 genomes]
rs73260973	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73260982	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73262907	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73262914	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73262917	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73268833	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73268850	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73268853	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73268855	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73268878	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73268893	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73271028	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73271033	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73271470	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73271472	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73271477	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73271478	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73271482	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73271490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73271496	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73271500	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73271502	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73273117	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73273136	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73273139	1.00[ASN][1000 genomes]
rs73273405	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73273409	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73273414	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73273418	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73273420	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73273428	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7462792	1.00[ASN][1000 genomes]
rs7819168	1.00[EUR][1000 genomes]
rs7822617	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7825890	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7833543	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428204	chr8:86405478-87312208	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv529563	chr8:86467090-87381984	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv891147	chr8:86886950-87333968	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv611674	chr8:87156172-87315920	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1027648	chr8:87161437-87319476	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv429926	chr8:87161695-87429872	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv1020485	chr8:87167184-87330873	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv1023114	chr8:87167184-87335197	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv1033960	chr8:87167790-87334194	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv1016050	chr8:87167790-87335197	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv1016177	chr8:87177368-87319476	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
13	nsv1023772	chr8:87177368-87334194	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	nsv1031874	chr8:87177368-87335197	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	nsv1030401	chr8:87177368-87337260	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
16	nsv1033007	chr8:87185458-87319476	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
17	esv2761445	chr8:87185470-87335197	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
18	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
19	nsv465733	chr8:87187050-87302328	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
20	nsv611675	chr8:87187050-87302328	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
21	nsv519507	chr8:87187195-87333968	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
22	nsv1020459	chr8:87200116-87330912	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
23	nsv539660	chr8:87200116-87330912	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
24	esv3360246	chr8:87200232-87419244	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
25	nsv611708	chr8:87205885-87333968	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
26	nsv1021125	chr8:87208343-87331289	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
27	nsv539661	chr8:87208343-87331289	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
28	esv3428157	chr8:87256885-87281336	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
29	nsv1017535	chr8:87261702-87367934	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87251200-87275600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:87268000-87276800	Weak transcription	Pancreas	Pancrea
3	chr8:87272000-87276400	Weak transcription	Liver	Liver
4	chr8:87273600-87275000	Weak transcription	HepG2	liver
5	chr8:87274000-87274600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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