Variant report

Variant	rs7018101
Chromosome Location	chr8:87459349-87459350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs16905416	1.00[CHB][hapmap];0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1865864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34473043	1.00[ASN][1000 genomes]
rs35154764	1.00[ASN][1000 genomes]
rs35584329	1.00[ASN][1000 genomes]
rs4332109	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4443643	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4451291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4520141	1.00[ASN][1000 genomes]
rs57775185	1.00[ASN][1000 genomes]
rs57899573	1.00[ASN][1000 genomes]
rs58223572	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59329724	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59334514	1.00[ASN][1000 genomes]
rs59667025	1.00[ASN][1000 genomes]
rs59686387	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60371751	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61254300	1.00[ASN][1000 genomes]
rs61291838	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471315	0.88[EUR][1000 genomes]
rs66948125	1.00[ASN][1000 genomes]
rs67671364	1.00[ASN][1000 genomes]
rs68064728	1.00[ASN][1000 genomes]
rs6982851	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988382	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7011900	1.00[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7015160	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73254767	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73257052	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73257083	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73257093	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73257101	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73260973	1.00[ASN][1000 genomes]
rs73260982	1.00[ASN][1000 genomes]
rs73262907	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73262914	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73262917	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73265786	1.00[ASN][1000 genomes]
rs73268833	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73268850	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73268853	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73268855	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73268878	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73268893	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73271028	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73271033	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73271467	1.00[ASN][1000 genomes]
rs73271470	1.00[ASN][1000 genomes]
rs73271472	1.00[ASN][1000 genomes]
rs73271477	1.00[ASN][1000 genomes]
rs73271478	1.00[ASN][1000 genomes]
rs73271482	1.00[ASN][1000 genomes]
rs73271490	1.00[ASN][1000 genomes]
rs73271496	1.00[ASN][1000 genomes]
rs73271500	1.00[ASN][1000 genomes]
rs73271502	1.00[ASN][1000 genomes]
rs73273117	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73273136	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73273139	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73273140	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73273151	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73273159	0.92[EUR][1000 genomes]
rs73273168	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73273405	1.00[ASN][1000 genomes]
rs73273409	1.00[ASN][1000 genomes]
rs73273414	1.00[ASN][1000 genomes]
rs73273418	1.00[ASN][1000 genomes]
rs73273420	1.00[ASN][1000 genomes]
rs73273428	1.00[ASN][1000 genomes]
rs7462792	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7819168	1.00[CEU][hapmap]
rs7819287	1.00[ASN][1000 genomes]
rs7822617	1.00[ASN][1000 genomes]
rs7825890	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7833543	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842293	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv933966	chr8:87454655-87591558	ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87427600-87485600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:87428600-87460800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr8:87436800-87483200	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr8:87437400-87482800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr8:87437800-87489600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr8:87441800-87507600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:87442800-87475600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:87443000-87478800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:87443600-87459400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr8:87444400-87488800	Weak transcription	NHLF	lung
11	chr8:87445800-87461000	Weak transcription	Small Intestine	intestine
12	chr8:87447200-87461000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr8:87447200-87476800	Weak transcription	Gastric	stomach
14	chr8:87447200-87476800	Weak transcription	Spleen	Spleen
15	chr8:87448200-87460800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr8:87448400-87460600	Weak transcription	Hela-S3	cervix
17	chr8:87448400-87476800	Weak transcription	Aorta	Aorta
18	chr8:87448800-87460600	Weak transcription	HUVEC	blood vessel
19	chr8:87448800-87481400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr8:87448800-87502800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr8:87449200-87460800	Weak transcription	K562	blood
22	chr8:87449400-87460800	Weak transcription	Colonic Mucosa	Colon
23	chr8:87449400-87476800	Weak transcription	Lung	lung
24	chr8:87449600-87480800	Weak transcription	Right Ventricle	heart
25	chr8:87451600-87477600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr8:87451800-87459600	Weak transcription	Fetal Intestine Small	intestine
27	chr8:87451800-87459600	Weak transcription	Fetal Stomach	stomach
28	chr8:87451800-87485400	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr8:87452000-87472800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr8:87452400-87460000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr8:87453200-87468800	Strong transcription	Primary B cells from cord blood	blood
32	chr8:87453200-87482600	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr8:87453200-87488600	Weak transcription	HSMMtube	muscle
34	chr8:87453400-87460600	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr8:87453400-87475800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr8:87453400-87492000	Strong transcription	Adipose Nuclei	Adipose
37	chr8:87453600-87482400	Weak transcription	Fetal Brain Female	brain
38	chr8:87453800-87460800	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr8:87454000-87460600	Weak transcription	Brain Substantia Nigra	brain
40	chr8:87454000-87467800	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr8:87454000-87472400	Weak transcription	Stomach Mucosa	stomach
42	chr8:87454200-87459800	Weak transcription	NH-A	brain
43	chr8:87454600-87460800	Weak transcription	NHDF-Ad	bronchial
44	chr8:87454600-87469000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr8:87454800-87460400	Weak transcription	NHEK	skin
46	chr8:87454800-87460800	Weak transcription	Fetal Heart	heart
47	chr8:87455000-87465000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr8:87456000-87465600	Weak transcription	Fetal Muscle Leg	muscle
49	chr8:87456400-87459400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr8:87456400-87460200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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