Variant report

Variant	rs16907219
Chromosome Location	chr12:9951041-9951042
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:9901213..9901752-chr12:9950468..9951334,2	MCF-7	breast:
2	chr12:9899277..9916007-chr12:9939474..9959569,108	K562	blood:
3	chr12:9937628..9939734-chr12:9949484..9951679,2	K562	blood:
4	chr12:9921450..9923260-chr12:9950246..9952322,2	K562	blood:
5	chr12:9903167..9904499-chr12:9949360..9951288,15	MCF-7	breast:
6	chr12:9901140..9901915-chr12:9950375..9951199,4	MCF-7	breast:
7	chr12:9903015..9904410-chr12:9949927..9951349,11	K562	blood:
8	chr12:9901100..9927208-chr12:9932356..9954328,123	K562	blood:

No data

No data

No data

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16907188	0.82[YRI][hapmap];0.90[AFR][1000 genomes]
rs16907190	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16907194	0.82[YRI][hapmap];0.84[AFR][1000 genomes]
rs16907197	0.82[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16907222	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16907398	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16907448	0.81[YRI][hapmap];0.87[AFR][1000 genomes]
rs7139009	0.84[AFR][1000 genomes]
rs7955679	0.81[YRI][hapmap];0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3377937	chr12:9938734-9962518	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9947600-9951200	Enhancers	Primary B cells from cord blood	blood
2	chr12:9947600-9951400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr12:9947800-9951200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr12:9950200-9951400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr12:9951000-9951400	Enhancers	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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