Variant report
| Variant | rs16907448 |
|---|---|
| Chromosome Location | chr12:9962072-9962073 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000256912 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs16907188 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16907190 | 0.85[YRI][hapmap] |
| rs16907194 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16907197 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes] |
| rs16907219 | 0.81[YRI][hapmap];0.87[AFR][1000 genomes] |
| rs16907222 | 0.81[YRI][hapmap];0.87[AFR][1000 genomes] |
| rs16907398 | 0.92[AFR][1000 genomes] |
| rs16911504 | 1.00[CHD][hapmap] |
| rs7139009 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7955679 | 1.00[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3377937 | chr12:9938734-9962518 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
