Variant report

Variant	rs16907611
Chromosome Location	chr9:94340470-94340471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16907651	0.94[CHB][hapmap];0.89[JPT][hapmap]
rs1890975	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes]
rs4743844	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs4743846	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes]
rs4744062	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744064	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744087	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs9409429	0.83[CHB][hapmap]
rs9409430	0.83[CHB][hapmap]
rs9409609	0.83[CHB][hapmap]
rs9409610	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412085	chr9:94340449-94340663	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94335600-94347000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:94335800-94344800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:94338400-94341400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:94339200-94341000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:94339400-94341000	Enhancers	Colon Smooth Muscle	Colon
6	chr9:94339600-94341000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr9:94339600-94341000	Enhancers	Stomach Smooth Muscle	stomach
8	chr9:94339600-94341200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:94339600-94341200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:94339600-94341200	Enhancers	Fetal Brain Female	brain
11	chr9:94339800-94340800	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr9:94339800-94341000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr9:94339800-94341000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr9:94340000-94340600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr9:94340000-94340600	Flanking Active TSS	Brain Germinal Matrix	brain
16	chr9:94340000-94340800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr9:94340200-94342400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr9:94340400-94341200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:94340400-94341200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr9:94340400-94342400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr9:94340400-94343000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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