Variant report

Variant	rs16908037
Chromosome Location	chr11:10629398-10629399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10628715..10631379-chr11:10733755..10736370,2	K562	blood:
2	chr11:10623393..10626266-chr11:10628128..10630902,3	K562	blood:
3	chr11:10607679..10609849-chr11:10628348..10630099,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10500730	1.00[CEU][hapmap]
rs11042886	0.85[YRI][hapmap]
rs16908028	0.80[EUR][1000 genomes]
rs16908086	1.00[CEU][hapmap]
rs16908093	1.00[CEU][hapmap]
rs7948666	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10595000-10629600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:10595000-10632800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:10620200-10635800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:10620400-10630000	Enhancers	Fetal Muscle Leg	muscle
5	chr11:10620400-10630200	Enhancers	Fetal Thymus	thymus
6	chr11:10622800-10632800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr11:10623400-10635400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:10624800-10630000	Enhancers	Placenta Amnion	Placenta Amnion
9	chr11:10624800-10632800	Enhancers	Thymus	Thymus
10	chr11:10625000-10629800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:10625000-10631800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr11:10625200-10630200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr11:10625200-10630200	Genic enhancers	Fetal Stomach	stomach
14	chr11:10625400-10632000	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr11:10625600-10629400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:10625600-10629600	Enhancers	NHDF-Ad	bronchial
17	chr11:10626000-10629600	Enhancers	Fetal Lung	lung
18	chr11:10626400-10629400	Enhancers	HepG2	liver
19	chr11:10626600-10629800	Strong transcription	Colon Smooth Muscle	Colon
20	chr11:10626600-10630200	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:10626600-10631000	Weak transcription	Stomach Mucosa	stomach
22	chr11:10626800-10632200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr11:10627000-10629400	Genic enhancers	Duodenum Smooth Muscle	Duodenum
24	chr11:10627000-10629600	Enhancers	Spleen	Spleen
25	chr11:10627200-10629400	Enhancers	Lung	lung
26	chr11:10627200-10629600	Genic enhancers	NHLF	lung
27	chr11:10627400-10629400	Enhancers	Fetal Kidney	kidney
28	chr11:10627400-10630000	Enhancers	Duodenum Mucosa	Duodenum
29	chr11:10627600-10629400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:10627600-10629400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr11:10627600-10629400	Enhancers	Fetal Intestine Large	intestine
32	chr11:10627600-10629400	Genic enhancers	Stomach Smooth Muscle	stomach
33	chr11:10627600-10629800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr11:10627800-10629600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr11:10627800-10630000	Enhancers	Placenta	Placenta
36	chr11:10628000-10631200	Enhancers	Adipose Nuclei	Adipose
37	chr11:10628200-10629400	Enhancers	Esophagus	oesophagus
38	chr11:10628200-10629600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:10628200-10629600	Enhancers	Muscle Satellite Cultured Cells	--
40	chr11:10628200-10630200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:10628200-10640200	Weak transcription	Rectal Smooth Muscle	rectum
42	chr11:10628400-10629400	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr11:10628400-10629600	Enhancers	HUVEC	blood vessel
44	chr11:10628600-10629400	Enhancers	GM12878-XiMat	blood
45	chr11:10628600-10629600	Enhancers	Osteobl	bone
46	chr11:10628600-10629800	Enhancers	Fetal Muscle Trunk	muscle
47	chr11:10628600-10630800	Enhancers	Brain Hippocampus Middle	brain
48	chr11:10628600-10631200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr11:10628600-10645600	Weak transcription	Brain Anterior Caudate	brain
50	chr11:10628800-10629400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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