Variant report

Variant	rs11042886
Chromosome Location	chr11:10601465-10601466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10599184..10602109-chr11:10604361..10607201,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11042889	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11042952	1.00[ASN][1000 genomes]
rs11603775	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11827743	0.81[EUR][1000 genomes]
rs12285938	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12289747	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12787691	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12789229	1.00[ASN][1000 genomes]
rs12793442	1.00[ASN][1000 genomes]
rs12795823	1.00[ASN][1000 genomes]
rs1364738	1.00[CHB][hapmap]
rs16907981	0.81[EUR][1000 genomes]
rs16907986	0.81[EUR][1000 genomes]
rs16908096	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs28526173	1.00[EUR][1000 genomes]
rs35276196	1.00[ASN][1000 genomes]
rs35328794	1.00[ASN][1000 genomes]
rs35439915	1.00[ASN][1000 genomes]
rs35508216	1.00[ASN][1000 genomes]
rs35728297	1.00[ASN][1000 genomes]
rs35857561	1.00[ASN][1000 genomes]
rs4482022	1.00[ASN][1000 genomes]
rs4910163	1.00[ASN][1000 genomes]
rs56245730	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57197678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7101571	0.81[EUR][1000 genomes]
rs73413832	1.00[ASN][1000 genomes]
rs7944136	1.00[ASN][1000 genomes]
rs7948666	1.00[TSI][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10573000-10603200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10580600-10609800	Weak transcription	Thymus	Thymus
3	chr11:10583200-10601800	Weak transcription	Fetal Intestine Small	intestine
4	chr11:10586400-10620400	Weak transcription	Brain Anterior Caudate	brain
5	chr11:10587600-10605000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:10588600-10602800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:10590600-10601600	Weak transcription	Adipose Nuclei	Adipose
8	chr11:10590600-10605600	Weak transcription	NH-A	brain
9	chr11:10590600-10611200	Weak transcription	Pancreas	Pancrea
10	chr11:10590800-10608200	Weak transcription	NHDF-Ad	bronchial
11	chr11:10591400-10603200	Weak transcription	Osteobl	bone
12	chr11:10592000-10602800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:10592000-10608000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:10592400-10622600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:10592600-10601800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr11:10593400-10605000	Weak transcription	Gastric	stomach
17	chr11:10594000-10603600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:10594000-10605000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:10594400-10606000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:10595000-10629600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:10595000-10632800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr11:10595200-10601600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr11:10595400-10615400	Weak transcription	Brain Angular Gyrus	brain
24	chr11:10595600-10603200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:10595800-10602600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr11:10595800-10605200	Strong transcription	Aorta	Aorta
27	chr11:10595800-10608400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:10597200-10605600	Weak transcription	Colonic Mucosa	Colon
29	chr11:10597200-10625800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr11:10597800-10602800	Weak transcription	Right Atrium	heart
31	chr11:10597800-10602800	Weak transcription	HSMMtube	muscle
32	chr11:10598000-10602600	Weak transcription	Fetal Muscle Leg	muscle
33	chr11:10598000-10608200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr11:10598200-10602400	Weak transcription	Fetal Lung	lung
35	chr11:10598200-10605400	Weak transcription	Psoas Muscle	Psoas
36	chr11:10599000-10603200	Strong transcription	Ovary	ovary
37	chr11:10599000-10605800	Enhancers	Primary B cells from peripheral blood	blood
38	chr11:10599800-10601800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr11:10600000-10601800	Genic enhancers	Fetal Stomach	stomach
40	chr11:10600000-10602800	Enhancers	Primary B cells from cord blood	blood
41	chr11:10600000-10603200	Strong transcription	Fetal Intestine Large	intestine
42	chr11:10600000-10606000	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr11:10600200-10602200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
44	chr11:10600200-10603000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr11:10600200-10605000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:10600200-10606800	Enhancers	HUVEC	blood vessel
47	chr11:10600400-10601800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr11:10600400-10602800	Strong transcription	NHLF	lung
49	chr11:10600400-10605800	Genic enhancers	Stomach Smooth Muscle	stomach
50	chr11:10600400-10605800	Enhancers	Spleen	Spleen

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