Variant report

Variant	rs35328794
Chromosome Location	chr11:10674285-10674286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10322610..10325546-chr11:10673380..10676333,2	K562	blood:
2	chr11:10560102..10563921-chr11:10672313..10677222,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110315	Chromatin interaction
ENSG00000177112	Chromatin interaction
ENSG00000254554	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11042886	1.00[ASN][1000 genomes]
rs11042889	1.00[ASN][1000 genomes]
rs11042952	1.00[ASN][1000 genomes]
rs11603775	1.00[ASN][1000 genomes]
rs12285938	1.00[ASN][1000 genomes]
rs12787691	1.00[ASN][1000 genomes]
rs12789229	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12793442	1.00[ASN][1000 genomes]
rs12795823	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16908096	1.00[ASN][1000 genomes]
rs35276196	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35439915	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35508216	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35728297	1.00[ASN][1000 genomes]
rs35857561	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4482022	1.00[ASN][1000 genomes]
rs4910163	1.00[ASN][1000 genomes]
rs57197678	1.00[ASN][1000 genomes]
rs73413832	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944136	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10646000-10679000	Weak transcription	Fetal Lung	lung
2	chr11:10646200-10679200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr11:10650400-10678600	Weak transcription	Right Ventricle	heart
4	chr11:10658800-10676600	Enhancers	Primary B cells from peripheral blood	blood
5	chr11:10664200-10678800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:10664400-10675000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr11:10668600-10674400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:10669400-10674400	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:10669600-10675600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:10669600-10676800	Weak transcription	Fetal Intestine Large	intestine
11	chr11:10670200-10674600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:10670200-10675000	Weak transcription	K562	blood
13	chr11:10670400-10675400	Genic enhancers	Fetal Stomach	stomach
14	chr11:10670800-10675000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:10670800-10676400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:10671000-10676200	Weak transcription	A549	lung
17	chr11:10671400-10676000	Enhancers	Brain Anterior Caudate	brain
18	chr11:10671400-10676200	Enhancers	Brain Hippocampus Middle	brain
19	chr11:10671400-10677000	Weak transcription	Fetal Intestine Small	intestine
20	chr11:10672000-10679200	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr11:10672200-10674600	Weak transcription	Primary B cells from cord blood	blood
22	chr11:10672400-10674400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:10672400-10674400	Weak transcription	Fetal Muscle Leg	muscle
24	chr11:10672400-10675000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:10672600-10674400	Weak transcription	Brain Angular Gyrus	brain
26	chr11:10672600-10674400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr11:10672600-10674800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr11:10673000-10682200	Enhancers	Placenta	Placenta
29	chr11:10673200-10674600	Enhancers	NHDF-Ad	bronchial
30	chr11:10673200-10675800	Enhancers	Lung	lung
31	chr11:10673200-10676200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:10673200-10676800	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr11:10673200-10677800	Enhancers	Colon Smooth Muscle	Colon
34	chr11:10673400-10674600	Enhancers	Fetal Muscle Trunk	muscle
35	chr11:10673400-10674600	Genic enhancers	NHLF	lung
36	chr11:10673400-10674800	Enhancers	Colonic Mucosa	Colon
37	chr11:10673400-10675200	Flanking Active TSS	Stomach Smooth Muscle	stomach
38	chr11:10673400-10676000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:10673400-10676600	Enhancers	Spleen	Spleen
40	chr11:10673400-10679200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr11:10673400-10682800	Enhancers	Ovary	ovary
42	chr11:10673600-10674400	Weak transcription	Brain Cingulate Gyrus	brain
43	chr11:10673600-10675200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr11:10673600-10675400	Weak transcription	GM12878-XiMat	blood
45	chr11:10673600-10678400	Weak transcription	Left Ventricle	heart
46	chr11:10673600-10678400	Weak transcription	Right Atrium	heart
47	chr11:10673800-10674400	Weak transcription	Aorta	Aorta
48	chr11:10673800-10675400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
49	chr11:10673800-10676200	Weak transcription	Osteobl	bone
50	chr11:10673800-10678800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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