Variant report

Variant	rs11042952
Chromosome Location	chr11:10775218-10775219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10773187..10775500-chr11:10779450..10783508,6	K562	blood:
2	chr11:10770139..10775230-chr11:10827183..10832173,6	K562	blood:
3	chr11:10772653..10774782-chr11:10774842..10778318,3	MCF-7	breast:
4	chr11:10487786..10489702-chr11:10773796..10776018,2	K562	blood:

Variant related genes	Relation type
ENSG00000110321	Chromatin interaction
ENSG00000198730	Chromatin interaction
ENSG00000246308	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11042886	1.00[ASN][1000 genomes]
rs11042889	1.00[ASN][1000 genomes]
rs11603775	1.00[ASN][1000 genomes]
rs12285938	1.00[ASN][1000 genomes]
rs12362434	1.00[AMR][1000 genomes]
rs12364254	1.00[AMR][1000 genomes]
rs12787691	1.00[ASN][1000 genomes]
rs12789229	1.00[ASN][1000 genomes]
rs12793442	1.00[ASN][1000 genomes]
rs12795823	1.00[ASN][1000 genomes]
rs16908096	1.00[ASN][1000 genomes]
rs35276196	1.00[ASN][1000 genomes]
rs35328794	1.00[ASN][1000 genomes]
rs35439915	1.00[ASN][1000 genomes]
rs35508216	1.00[ASN][1000 genomes]
rs35728297	1.00[ASN][1000 genomes]
rs35857561	1.00[ASN][1000 genomes]
rs4482022	1.00[ASN][1000 genomes]
rs4910163	1.00[ASN][1000 genomes]
rs57197678	1.00[ASN][1000 genomes]
rs73413832	1.00[ASN][1000 genomes]
rs7944136	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1037639	chr11:10737790-10871809	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv1040606	chr11:10763753-10995698	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10773600-10778600	Weak transcription	Esophagus	oesophagus
2	chr11:10773600-10778600	Weak transcription	Gastric	stomach
3	chr11:10773600-10795600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:10773600-10797000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:10773600-10806000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:10773800-10807400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:10774000-10775600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:10774000-10775600	Weak transcription	Ovary	ovary
9	chr11:10774000-10775800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:10774000-10776400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:10774000-10776600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:10774000-10777000	Weak transcription	Brain Substantia Nigra	brain
13	chr11:10774000-10777200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:10774000-10777600	Weak transcription	Lung	lung
15	chr11:10774000-10777600	Weak transcription	Psoas Muscle	Psoas
16	chr11:10774000-10778400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:10774000-10778600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:10774000-10778600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:10774000-10778600	Weak transcription	Aorta	Aorta
20	chr11:10774000-10778600	Weak transcription	Pancreas	Pancrea
21	chr11:10774000-10778600	Weak transcription	Right Ventricle	heart
22	chr11:10774000-10778600	Weak transcription	Spleen	Spleen
23	chr11:10774000-10778800	Weak transcription	Colonic Mucosa	Colon
24	chr11:10774000-10780800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr11:10774200-10776400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr11:10774200-10777000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr11:10774200-10778200	Weak transcription	Fetal Stomach	stomach
28	chr11:10774200-10780800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr11:10774200-10802600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:10774400-10775400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr11:10774400-10775400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:10774400-10775400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:10774400-10775400	Weak transcription	Brain Anterior Caudate	brain
34	chr11:10774400-10775400	Weak transcription	Brain Hippocampus Middle	brain
35	chr11:10774400-10775400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr11:10774400-10775400	Weak transcription	Fetal Brain Female	brain
37	chr11:10774400-10775400	Weak transcription	Fetal Intestine Large	intestine
38	chr11:10774400-10775400	Weak transcription	Hela-S3	cervix
39	chr11:10774400-10775600	Genic enhancers	Dnd41	blood
40	chr11:10774400-10775600	Active TSS	GM12878-XiMat	blood
41	chr11:10774400-10776200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr11:10774400-10776400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
43	chr11:10774400-10776400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr11:10774400-10776400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr11:10774400-10776600	Weak transcription	Colon Smooth Muscle	Colon
46	chr11:10774400-10776600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr11:10774400-10776600	Weak transcription	A549	lung
48	chr11:10774400-10777000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr11:10774400-10777000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr11:10774400-10777000	Weak transcription	Fetal Brain Male	brain

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