Variant report

Variant	rs35439915
Chromosome Location	chr11:10663525-10663526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10663428..10665355-chr11:10666767..10668361,2	K562	blood:
2	chr11:10662421..10664986-chr11:10669210..10672158,2	K562	blood:
3	chr11:10662540..10664082-chr11:10686222..10688544,2	K562	blood:
4	chr11:10661837..10665351-chr11:10668716..10672933,3	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11042886	1.00[ASN][1000 genomes]
rs11042889	1.00[ASN][1000 genomes]
rs11042952	1.00[ASN][1000 genomes]
rs11603775	1.00[ASN][1000 genomes]
rs12285938	1.00[ASN][1000 genomes]
rs12787691	1.00[ASN][1000 genomes]
rs12789229	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12793442	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12795823	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16908096	1.00[ASN][1000 genomes]
rs35276196	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35328794	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35508216	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35728297	1.00[ASN][1000 genomes]
rs35857561	1.00[ASN][1000 genomes]
rs4482022	1.00[ASN][1000 genomes]
rs4910163	1.00[ASN][1000 genomes]
rs57197678	1.00[ASN][1000 genomes]
rs73413832	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944136	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10629400-10663600	Weak transcription	Fetal Intestine Large	intestine
2	chr11:10646000-10679000	Weak transcription	Fetal Lung	lung
3	chr11:10646200-10679200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:10646800-10667600	Weak transcription	Right Atrium	heart
5	chr11:10650400-10678600	Weak transcription	Right Ventricle	heart
6	chr11:10651800-10670600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:10652400-10668200	Weak transcription	NHLF	lung
8	chr11:10653200-10668200	Weak transcription	Esophagus	oesophagus
9	chr11:10653600-10663600	Weak transcription	Lung	lung
10	chr11:10653600-10669000	Weak transcription	Fetal Intestine Small	intestine
11	chr11:10658400-10663800	Enhancers	Brain Anterior Caudate	brain
12	chr11:10658600-10665000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr11:10658800-10676600	Enhancers	Primary B cells from peripheral blood	blood
14	chr11:10659000-10664200	Enhancers	Fetal Muscle Leg	muscle
15	chr11:10659800-10666000	Weak transcription	Ovary	ovary
16	chr11:10660400-10663600	Weak transcription	Colonic Mucosa	Colon
17	chr11:10660400-10667600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:10660800-10664400	Enhancers	Primary hematopoietic stem cells	blood
19	chr11:10660800-10664400	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr11:10660800-10664400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:10661000-10663800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr11:10661000-10664400	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr11:10661000-10665400	Enhancers	Colon Smooth Muscle	Colon
24	chr11:10661200-10663800	Enhancers	Fetal Thymus	thymus
25	chr11:10661200-10664200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr11:10661200-10664600	Genic enhancers	Fetal Stomach	stomach
27	chr11:10661200-10665000	Enhancers	Spleen	Spleen
28	chr11:10661200-10665800	Enhancers	Brain Hippocampus Middle	brain
29	chr11:10661200-10673600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr11:10661400-10663800	Genic enhancers	Aorta	Aorta
31	chr11:10661400-10664200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:10661400-10664400	Enhancers	Placenta	Placenta
33	chr11:10661400-10665800	Enhancers	Brain Substantia Nigra	brain
34	chr11:10661600-10669000	Weak transcription	NH-A	brain
35	chr11:10661800-10667600	Weak transcription	Left Ventricle	heart
36	chr11:10662000-10663600	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr11:10662000-10667400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:10662400-10663600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr11:10662400-10663600	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr11:10662400-10663800	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr11:10662400-10664200	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr11:10662400-10664200	Enhancers	Rectal Smooth Muscle	rectum
43	chr11:10662400-10672000	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr11:10662600-10663600	Weak transcription	Liver	Liver
45	chr11:10662600-10663600	Genic enhancers	Stomach Smooth Muscle	stomach
46	chr11:10662800-10663600	Enhancers	NHDF-Ad	bronchial
47	chr11:10662800-10663800	Flanking Active TSS	Primary B cells from cord blood	blood
48	chr11:10662800-10664200	Flanking Active TSS	GM12878-XiMat	blood
49	chr11:10662800-10665000	Enhancers	Fetal Muscle Trunk	muscle
50	chr11:10662800-10665400	Enhancers	Brain Angular Gyrus	brain

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