Variant report

Variant	rs7944136
Chromosome Location	chr11:10661951-10661952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10661837..10665351-chr11:10668716..10672933,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11042886	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11042889	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11042952	1.00[ASN][1000 genomes]
rs11603775	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12285938	1.00[ASN][1000 genomes]
rs12787691	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12789229	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12793442	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12795823	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1364738	1.00[CHB][hapmap]
rs16908096	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs35276196	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35328794	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35439915	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35508216	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35728297	1.00[ASN][1000 genomes]
rs35857561	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4482022	1.00[ASN][1000 genomes]
rs4910163	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57197678	1.00[ASN][1000 genomes]
rs73413832	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10629400-10663600	Weak transcription	Fetal Intestine Large	intestine
2	chr11:10629600-10662800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:10646000-10679000	Weak transcription	Fetal Lung	lung
4	chr11:10646200-10679200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr11:10646800-10667600	Weak transcription	Right Atrium	heart
6	chr11:10650400-10663400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:10650400-10678600	Weak transcription	Right Ventricle	heart
8	chr11:10651800-10670600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:10652400-10668200	Weak transcription	NHLF	lung
10	chr11:10653200-10668200	Weak transcription	Esophagus	oesophagus
11	chr11:10653600-10663600	Weak transcription	Lung	lung
12	chr11:10653600-10669000	Weak transcription	Fetal Intestine Small	intestine
13	chr11:10658400-10663800	Enhancers	Brain Anterior Caudate	brain
14	chr11:10658600-10662400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:10658600-10662400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr11:10658600-10665000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr11:10658800-10662000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:10658800-10662400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:10658800-10676600	Enhancers	Primary B cells from peripheral blood	blood
20	chr11:10659000-10662000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:10659000-10664200	Enhancers	Fetal Muscle Leg	muscle
22	chr11:10659200-10662000	Enhancers	Rectal Smooth Muscle	rectum
23	chr11:10659200-10663000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:10659800-10666000	Weak transcription	Ovary	ovary
25	chr11:10660000-10662800	Weak transcription	NHDF-Ad	bronchial
26	chr11:10660400-10663600	Weak transcription	Colonic Mucosa	Colon
27	chr11:10660400-10667600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:10660800-10662800	Weak transcription	Fetal Muscle Trunk	muscle
29	chr11:10660800-10662800	Enhancers	GM12878-XiMat	blood
30	chr11:10660800-10663000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr11:10660800-10664400	Enhancers	Primary hematopoietic stem cells	blood
32	chr11:10660800-10664400	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr11:10660800-10664400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:10661000-10662000	Genic enhancers	Stomach Smooth Muscle	stomach
35	chr11:10661000-10662400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
36	chr11:10661000-10663800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr11:10661000-10664400	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr11:10661000-10665400	Enhancers	Colon Smooth Muscle	Colon
39	chr11:10661200-10662000	Enhancers	Brain Angular Gyrus	brain
40	chr11:10661200-10662400	Enhancers	Brain Cingulate Gyrus	brain
41	chr11:10661200-10663800	Enhancers	Fetal Thymus	thymus
42	chr11:10661200-10664200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr11:10661200-10664600	Genic enhancers	Fetal Stomach	stomach
44	chr11:10661200-10665000	Enhancers	Spleen	Spleen
45	chr11:10661200-10665800	Enhancers	Brain Hippocampus Middle	brain
46	chr11:10661200-10673600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr11:10661400-10662000	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr11:10661400-10662200	Weak transcription	Fetal Brain Female	brain
49	chr11:10661400-10662400	Enhancers	Adipose Nuclei	Adipose
50	chr11:10661400-10663000	Enhancers	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links