Variant report

Variant	rs73413832
Chromosome Location	chr11:10659203-10659204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr11:10659198-10660470	H1-neurons	neurons:	n/a	chr11:10659431-10659444 chr11:10659425-10659438 chr11:10659428-10659441

Variant related genes	Relation type
MRVI1	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11042886	1.00[ASN][1000 genomes]
rs11042889	1.00[ASN][1000 genomes]
rs11042952	1.00[ASN][1000 genomes]
rs11603775	1.00[ASN][1000 genomes]
rs12285938	1.00[ASN][1000 genomes]
rs12787691	1.00[ASN][1000 genomes]
rs12789229	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12793442	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12795823	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16908096	1.00[ASN][1000 genomes]
rs35276196	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35328794	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35439915	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35508216	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35728297	1.00[ASN][1000 genomes]
rs35857561	1.00[ASN][1000 genomes]
rs4482022	1.00[ASN][1000 genomes]
rs4910163	1.00[ASN][1000 genomes]
rs57197678	1.00[ASN][1000 genomes]
rs7944136	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10629400-10663600	Weak transcription	Fetal Intestine Large	intestine
2	chr11:10629600-10662800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:10639800-10661600	Weak transcription	Gastric	stomach
4	chr11:10640600-10661400	Weak transcription	Left Ventricle	heart
5	chr11:10644000-10659600	Weak transcription	Osteobl	bone
6	chr11:10646000-10661600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:10646000-10679000	Weak transcription	Fetal Lung	lung
8	chr11:10646200-10661400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr11:10646200-10679200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr11:10646400-10659400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:10646800-10667600	Weak transcription	Right Atrium	heart
12	chr11:10648000-10661200	Weak transcription	Spleen	Spleen
13	chr11:10648000-10661400	Weak transcription	Adipose Nuclei	Adipose
14	chr11:10650400-10663400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:10650400-10678600	Weak transcription	Right Ventricle	heart
16	chr11:10651800-10670600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:10652400-10668200	Weak transcription	NHLF	lung
18	chr11:10653200-10668200	Weak transcription	Esophagus	oesophagus
19	chr11:10653600-10663600	Weak transcription	Lung	lung
20	chr11:10653600-10669000	Weak transcription	Fetal Intestine Small	intestine
21	chr11:10654400-10660800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:10655200-10659800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr11:10655400-10661400	Weak transcription	Placenta	Placenta
24	chr11:10657600-10659400	Weak transcription	Ovary	ovary
25	chr11:10658000-10659600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:10658400-10660400	Enhancers	Brain Hippocampus Middle	brain
27	chr11:10658400-10663800	Enhancers	Brain Anterior Caudate	brain
28	chr11:10658600-10659800	Genic enhancers	Fetal Stomach	stomach
29	chr11:10658600-10661000	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr11:10658600-10662400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:10658600-10662400	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr11:10658600-10665000	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr11:10658800-10659400	Weak transcription	Colon Smooth Muscle	Colon
34	chr11:10658800-10659600	Enhancers	GM12878-XiMat	blood
35	chr11:10658800-10660000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr11:10658800-10661400	Enhancers	Fetal Brain Male	brain
37	chr11:10658800-10662000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:10658800-10662400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:10658800-10676600	Enhancers	Primary B cells from peripheral blood	blood
40	chr11:10659000-10660400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr11:10659000-10661000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr11:10659000-10662000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:10659000-10664200	Enhancers	Fetal Muscle Leg	muscle
44	chr11:10659200-10659600	Genic enhancers	Aorta	Aorta
45	chr11:10659200-10659800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr11:10659200-10659800	Enhancers	Fetal Muscle Trunk	muscle
47	chr11:10659200-10660000	Enhancers	Brain Angular Gyrus	brain
48	chr11:10659200-10660000	Enhancers	Brain Cingulate Gyrus	brain
49	chr11:10659200-10660000	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr11:10659200-10660200	Enhancers	Duodenum Smooth Muscle	Duodenum

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