Variant report

Variant	rs11603775
Chromosome Location	chr11:10613444-10613445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EBF1	chr11:10613409-10613708	GM12878	blood:	n/a	chr11:10613556-10613567 chr11:10613556-10613566 chr11:10613584-10613595

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10609197..10611359-chr11:10611921..10613725,2	K562	blood:

Variant related genes	Relation type
MRVI1-AS1	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11042886	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11042889	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042952	1.00[ASN][1000 genomes]
rs12285938	1.00[ASN][1000 genomes]
rs12787691	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12789229	1.00[ASN][1000 genomes]
rs12793442	1.00[ASN][1000 genomes]
rs12795823	1.00[ASN][1000 genomes]
rs1364738	1.00[CHB][hapmap]
rs16908096	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs35276196	1.00[ASN][1000 genomes]
rs35328794	1.00[ASN][1000 genomes]
rs35439915	1.00[ASN][1000 genomes]
rs35508216	1.00[ASN][1000 genomes]
rs35728297	1.00[ASN][1000 genomes]
rs35857561	1.00[ASN][1000 genomes]
rs4482022	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910163	1.00[ASN][1000 genomes]
rs57197678	1.00[ASN][1000 genomes]
rs73413832	1.00[ASN][1000 genomes]
rs7944136	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10586400-10620400	Weak transcription	Brain Anterior Caudate	brain
2	chr11:10592400-10622600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:10595000-10629600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:10595000-10632800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:10595400-10615400	Weak transcription	Brain Angular Gyrus	brain
6	chr11:10597200-10625800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr11:10603600-10614800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:10603600-10614800	Weak transcription	Fetal Intestine Small	intestine
9	chr11:10603600-10621800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:10605200-10620400	Weak transcription	Fetal Thymus	thymus
11	chr11:10605800-10614000	Weak transcription	Gastric	stomach
12	chr11:10605800-10622200	Weak transcription	Spleen	Spleen
13	chr11:10606000-10620400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr11:10607000-10613600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:10607200-10616800	Enhancers	Placenta	Placenta
16	chr11:10607400-10626000	Weak transcription	Fetal Lung	lung
17	chr11:10608400-10616000	Enhancers	Placenta Amnion	Placenta Amnion
18	chr11:10608800-10625400	Weak transcription	Adipose Nuclei	Adipose
19	chr11:10609000-10613600	Weak transcription	HUVEC	blood vessel
20	chr11:10609400-10614800	Weak transcription	Ovary	ovary
21	chr11:10609600-10616000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr11:10609600-10619600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr11:10609600-10620800	Weak transcription	Brain Hippocampus Middle	brain
24	chr11:10610200-10614600	Weak transcription	Esophagus	oesophagus
25	chr11:10610200-10617000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:10610600-10615000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:10610800-10618800	Weak transcription	Primary hematopoietic stem cells	blood
28	chr11:10611000-10616000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:10611200-10614200	Genic enhancers	Fetal Stomach	stomach
30	chr11:10611200-10615200	Enhancers	NHDF-Ad	bronchial
31	chr11:10611400-10613600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:10611400-10613800	Enhancers	Fetal Muscle Leg	muscle
33	chr11:10611400-10615800	Weak transcription	K562	blood
34	chr11:10611600-10625000	Weak transcription	Brain Substantia Nigra	brain
35	chr11:10611800-10615000	Genic enhancers	NHLF	lung
36	chr11:10611800-10615200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr11:10612000-10615600	Enhancers	NHEK	skin
38	chr11:10612200-10614000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:10612200-10615000	Enhancers	Osteobl	bone
40	chr11:10612200-10615200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
41	chr11:10612400-10613600	Weak transcription	Colon Smooth Muscle	Colon
42	chr11:10612400-10615200	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr11:10612400-10616800	Enhancers	HMEC	breast
44	chr11:10612600-10613600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr11:10612600-10613600	Genic enhancers	Aorta	Aorta
46	chr11:10612600-10616200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr11:10612800-10613600	Weak transcription	Right Atrium	heart
48	chr11:10612800-10617400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr11:10613000-10613600	Enhancers	Primary B cells from peripheral blood	blood
50	chr11:10613000-10614000	Enhancers	HSMMtube	muscle

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