Variant report

Variant	rs16908096
Chromosome Location	chr11:10650096-10650097
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10648702..10650502-chr11:10654956..10657531,2	K562	blood:
2	chr11:10643731..10646144-chr11:10650025..10652236,2	K562	blood:
3	chr11:10643435..10646144-chr11:10650025..10653400,4	K562	blood:

Variant related genes	Relation type
ENSG00000072952	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11042886	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11042889	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11042952	1.00[ASN][1000 genomes]
rs11603775	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12285938	1.00[ASN][1000 genomes]
rs12787691	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12789229	1.00[ASN][1000 genomes]
rs12793442	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12795823	1.00[ASN][1000 genomes]
rs1364738	1.00[CHB][hapmap]
rs35276196	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35328794	1.00[ASN][1000 genomes]
rs35439915	1.00[ASN][1000 genomes]
rs35508216	1.00[ASN][1000 genomes]
rs35728297	1.00[ASN][1000 genomes]
rs35857561	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4482022	1.00[ASN][1000 genomes]
rs4910163	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57197678	1.00[ASN][1000 genomes]
rs73413832	1.00[ASN][1000 genomes]
rs7944136	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10629400-10650800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:10629400-10663600	Weak transcription	Fetal Intestine Large	intestine
3	chr11:10629600-10662800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:10637800-10659200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:10639800-10661600	Weak transcription	Gastric	stomach
6	chr11:10640600-10661400	Weak transcription	Left Ventricle	heart
7	chr11:10643600-10652400	Strong transcription	NHLF	lung
8	chr11:10643600-10653400	Enhancers	Primary B cells from peripheral blood	blood
9	chr11:10644000-10659600	Weak transcription	Osteobl	bone
10	chr11:10646000-10661600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:10646000-10679000	Weak transcription	Fetal Lung	lung
12	chr11:10646200-10661400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr11:10646200-10679200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr11:10646400-10659400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:10646800-10650400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:10646800-10667600	Weak transcription	Right Atrium	heart
17	chr11:10647200-10653000	Weak transcription	Esophagus	oesophagus
18	chr11:10647200-10659000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:10647400-10659200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:10647400-10659200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:10647600-10651000	Enhancers	Placenta Amnion	Placenta Amnion
22	chr11:10647800-10656800	Strong transcription	Aorta	Aorta
23	chr11:10647800-10658000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:10648000-10650200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:10648000-10651200	Weak transcription	Placenta	Placenta
26	chr11:10648000-10651200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr11:10648000-10653600	Strong transcription	Ovary	ovary
28	chr11:10648000-10658400	Weak transcription	Brain Anterior Caudate	brain
29	chr11:10648000-10659200	Weak transcription	Colonic Mucosa	Colon
30	chr11:10648000-10661200	Weak transcription	Spleen	Spleen
31	chr11:10648000-10661400	Weak transcription	Adipose Nuclei	Adipose
32	chr11:10648200-10652800	Weak transcription	Lung	lung
33	chr11:10648200-10658400	Weak transcription	Brain Hippocampus Middle	brain
34	chr11:10648200-10658600	Strong transcription	Fetal Stomach	stomach
35	chr11:10648400-10654600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr11:10648400-10659000	Weak transcription	Fetal Muscle Leg	muscle
37	chr11:10648800-10653600	Strong transcription	Fetal Intestine Small	intestine
38	chr11:10649200-10655600	Strong transcription	Stomach Smooth Muscle	stomach
39	chr11:10649400-10651200	Enhancers	Primary B cells from cord blood	blood
40	chr11:10649400-10651200	Strong transcription	Rectal Smooth Muscle	rectum
41	chr11:10649400-10651400	Enhancers	Fetal Thymus	thymus
42	chr11:10649400-10651600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr11:10649400-10654800	Strong transcription	Colon Smooth Muscle	Colon
44	chr11:10649600-10651000	Enhancers	Primary T cells from cord blood	blood
45	chr11:10649800-10650400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
46	chr11:10649800-10650400	Enhancers	Right Ventricle	heart
47	chr11:10649800-10650600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr11:10649800-10650600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr11:10649800-10650800	Enhancers	Primary T cells fromperipheralblood	blood
50	chr11:10649800-10650800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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