The 2.0 version of rSNPBase

Variant report

Variant rs57197678
Chromosome Location chr11:10600567-10600568
allele A/C/T
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:10573000-10603200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr11:10580600-10609800 Weak transcription Thymus Thymus
3 chr11:10583200-10601800 Weak transcription Fetal Intestine Small intestine
4 chr11:10586400-10620400 Weak transcription Brain Anterior Caudate brain
5 chr11:10587600-10605000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
6 chr11:10588600-10602800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr11:10590600-10601600 Weak transcription Adipose Nuclei Adipose
8 chr11:10590600-10605600 Weak transcription NH-A brain
9 chr11:10590600-10611200 Weak transcription Pancreas Pancrea
10 chr11:10590800-10608200 Weak transcription NHDF-Ad bronchial
11 chr11:10591400-10603200 Weak transcription Osteobl bone
12 chr11:10592000-10602800 Weak transcription Brain Cingulate Gyrus brain
13 chr11:10592000-10608000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr11:10592400-10622600 Weak transcription Sigmoid Colon Sigmoid Colon
15 chr11:10592600-10601800 Weak transcription iPS-18 Cell Line embryonic stem cell
16 chr11:10593400-10605000 Weak transcription Gastric stomach
17 chr11:10594000-10603600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr11:10594000-10605000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
19 chr11:10594400-10606000 Strong transcription Breast Myoepithelial Primary Cells Breast
20 chr11:10595000-10629600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
21 chr11:10595000-10632800 Weak transcription Brain Inferior Temporal Lobe brain
22 chr11:10595200-10601600 Weak transcription Fetal Muscle Trunk muscle
23 chr11:10595400-10615400 Weak transcription Brain Angular Gyrus brain
24 chr11:10595600-10603200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr11:10595800-10601000 Strong transcription Colon Smooth Muscle Colon
26 chr11:10595800-10601200 Weak transcription Placenta Placenta
27 chr11:10595800-10602600 Weak transcription Skeletal Muscle Female skeletal muscle
28 chr11:10595800-10605200 Strong transcription Aorta Aorta
29 chr11:10595800-10608400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
30 chr11:10596000-10601400 Weak transcription Skeletal Muscle Male skeletal muscle
31 chr11:10596200-10601200 Weak transcription Primary hematopoietic stem cells blood
32 chr11:10596400-10601400 Weak transcription Lung lung
33 chr11:10597200-10605600 Weak transcription Colonic Mucosa Colon
34 chr11:10597200-10625800 Weak transcription Rectal Mucosa Donor 29 rectum
35 chr11:10597800-10602800 Weak transcription Right Atrium heart
36 chr11:10597800-10602800 Weak transcription HSMMtube muscle
37 chr11:10598000-10601400 Weak transcription Left Ventricle heart
38 chr11:10598000-10602600 Weak transcription Fetal Muscle Leg muscle
39 chr11:10598000-10608200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
40 chr11:10598200-10602400 Weak transcription Fetal Lung lung
41 chr11:10598200-10605400 Weak transcription Psoas Muscle Psoas
42 chr11:10599000-10603200 Strong transcription Ovary ovary
43 chr11:10599000-10605800 Enhancers Primary B cells from peripheral blood blood
44 chr11:10599800-10601800 Weak transcription Rectal Smooth Muscle rectum
45 chr11:10600000-10601200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
46 chr11:10600000-10601400 Enhancers Monocytes-CD14+_RO01746 blood
47 chr11:10600000-10601800 Genic enhancers Fetal Stomach stomach
48 chr11:10600000-10602800 Enhancers Primary B cells from cord blood blood
49 chr11:10600000-10603200 Strong transcription Fetal Intestine Large intestine
50 chr11:10600000-10606000 Enhancers Primary monocytes fromperipheralblood blood

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Last update: Aug 31, 2015