Variant report

Variant	rs7101571
Chromosome Location	chr11:10589696-10589697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10535521..10536166-chr11:10589224..10589978,2	MCF-7	breast:
2	chr11:10563286..10564980-chr11:10587145..10589846,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11042886	0.81[EUR][1000 genomes]
rs11827743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12285938	0.81[EUR][1000 genomes]
rs12289747	0.81[EUR][1000 genomes]
rs16907941	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16907981	1.00[EUR][1000 genomes]
rs16907986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16908028	0.93[EUR][1000 genomes]
rs28526173	0.81[EUR][1000 genomes]
rs35296427	0.83[AMR][1000 genomes]
rs56245730	0.81[EUR][1000 genomes]
rs57197678	0.81[EUR][1000 genomes]
rs7948666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10573000-10603200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10578200-10590000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:10580400-10590000	Weak transcription	Ovary	ovary
4	chr11:10580600-10609800	Weak transcription	Thymus	Thymus
5	chr11:10583000-10600000	Weak transcription	Fetal Intestine Large	intestine
6	chr11:10583200-10601800	Weak transcription	Fetal Intestine Small	intestine
7	chr11:10583600-10595800	Weak transcription	Colon Smooth Muscle	Colon
8	chr11:10584000-10589800	Weak transcription	Lung	lung
9	chr11:10584000-10591200	Weak transcription	Aorta	Aorta
10	chr11:10585000-10590400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:10585800-10590000	Active TSS	Placenta	Placenta
12	chr11:10586000-10590400	Active TSS	Adipose Nuclei	Adipose
13	chr11:10586200-10594400	Weak transcription	Fetal Stomach	stomach
14	chr11:10586200-10594800	Weak transcription	Spleen	Spleen
15	chr11:10586400-10620400	Weak transcription	Brain Anterior Caudate	brain
16	chr11:10586600-10594000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:10586800-10590200	Weak transcription	NHDF-Ad	bronchial
18	chr11:10587200-10594200	Weak transcription	Primary B cells from cord blood	blood
19	chr11:10587200-10594400	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr11:10587200-10595600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:10587600-10605000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr11:10588000-10590000	Active TSS	Right Atrium	heart
23	chr11:10588000-10590200	Active TSS	Liver	Liver
24	chr11:10588000-10590200	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr11:10588200-10589800	Weak transcription	Brain Hippocampus Middle	brain
26	chr11:10588200-10591400	Weak transcription	Primary B cells from peripheral blood	blood
27	chr11:10588200-10594400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr11:10588400-10589800	Weak transcription	Fetal Muscle Leg	muscle
29	chr11:10588400-10595800	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr11:10588600-10591400	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr11:10588600-10592000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:10588600-10602800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr11:10588800-10589800	Weak transcription	Fetal Kidney	kidney
34	chr11:10588800-10589800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr11:10588800-10590000	Weak transcription	HUVEC	blood vessel
36	chr11:10589000-10594000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:10589000-10595000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:10589600-10589800	Active TSS	Fetal Adrenal Gland	Adrenal Gland

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