Variant report

Variant	rs16907981
Chromosome Location	chr11:10583600-10583601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10582570..10584540-chr11:10588427..10590159,2	K562	blood:
2	chr11:10576017..10579798-chr11:10580580..10584419,4	K562	blood:

Variant related genes	Relation type
ENSG00000133800	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11042886	0.81[EUR][1000 genomes]
rs11827743	1.00[EUR][1000 genomes]
rs12285938	0.81[EUR][1000 genomes]
rs12289747	0.81[EUR][1000 genomes]
rs16907941	0.84[EUR][1000 genomes]
rs16907986	1.00[EUR][1000 genomes]
rs16908028	0.93[EUR][1000 genomes]
rs28526173	0.81[EUR][1000 genomes]
rs56245730	0.81[EUR][1000 genomes]
rs57197678	0.81[EUR][1000 genomes]
rs7101571	1.00[EUR][1000 genomes]
rs7948666	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10573000-10603200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10576000-10585800	Weak transcription	Placenta	Placenta
3	chr11:10576200-10583600	Weak transcription	Spleen	Spleen
4	chr11:10578200-10583800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr11:10578200-10590000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:10578600-10585400	Weak transcription	Fetal Stomach	stomach
7	chr11:10580000-10585800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr11:10580200-10584000	Strong transcription	Aorta	Aorta
9	chr11:10580400-10583600	Weak transcription	Lung	lung
10	chr11:10580400-10588000	Weak transcription	Liver	Liver
11	chr11:10580400-10590000	Weak transcription	Ovary	ovary
12	chr11:10580600-10609800	Weak transcription	Thymus	Thymus
13	chr11:10582200-10586000	Weak transcription	Primary B cells from cord blood	blood
14	chr11:10582400-10583800	Enhancers	NHEK	skin
15	chr11:10583000-10588000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:10583000-10600000	Weak transcription	Fetal Intestine Large	intestine
17	chr11:10583200-10583800	Weak transcription	Adipose Nuclei	Adipose
18	chr11:10583200-10588200	Weak transcription	HUVEC	blood vessel
19	chr11:10583200-10601800	Weak transcription	Fetal Intestine Small	intestine
20	chr11:10583400-10583800	Enhancers	Right Atrium	heart
21	chr11:10583400-10584200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:10583600-10583800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:10583600-10583800	Genic enhancers	Spleen	Spleen
24	chr11:10583600-10584000	Enhancers	Lung	lung
25	chr11:10583600-10595800	Weak transcription	Colon Smooth Muscle	Colon

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