Variant report

Variant	rs16908028
Chromosome Location	chr11:10625563-10625564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10617278..10621445-chr11:10622664..10626512,4	K562	blood:
2	chr11:10604416..10607231-chr11:10624844..10627462,2	K562	blood:
3	chr11:10623393..10626266-chr11:10628128..10630902,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11042886	1.00[TSI][hapmap]
rs11827743	0.93[EUR][1000 genomes]
rs16907981	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs16907986	0.93[EUR][1000 genomes]
rs16908037	0.80[EUR][1000 genomes]
rs7101571	0.93[EUR][1000 genomes]
rs7948666	1.00[CEU][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16908028	FABP4	trans	brain	seeQTL

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10595000-10629600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:10595000-10632800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:10597200-10625800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:10607400-10626000	Weak transcription	Fetal Lung	lung
5	chr11:10615000-10625600	Weak transcription	Osteobl	bone
6	chr11:10615200-10625600	Weak transcription	NHDF-Ad	bronchial
7	chr11:10615800-10625600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:10617600-10626800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr11:10617600-10627600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:10620200-10635800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr11:10620400-10630000	Enhancers	Fetal Muscle Leg	muscle
12	chr11:10620400-10630200	Enhancers	Fetal Thymus	thymus
13	chr11:10620800-10626400	Enhancers	Placenta	Placenta
14	chr11:10621000-10626400	Enhancers	Fetal Muscle Trunk	muscle
15	chr11:10621200-10625800	Strong transcription	NHLF	lung
16	chr11:10621200-10627400	Weak transcription	Brain Anterior Caudate	brain
17	chr11:10621400-10625800	Weak transcription	Fetal Intestine Large	intestine
18	chr11:10621400-10626000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:10621600-10625600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:10621800-10625600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:10622000-10625600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:10622200-10625600	Strong transcription	Fetal Intestine Small	intestine
23	chr11:10622200-10627200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr11:10622400-10626000	Strong transcription	Colon Smooth Muscle	Colon
25	chr11:10622400-10627400	Enhancers	Primary B cells from peripheral blood	blood
26	chr11:10622400-10629200	Strong transcription	Aorta	Aorta
27	chr11:10622600-10625600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr11:10622600-10627400	Weak transcription	Fetal Kidney	kidney
29	chr11:10622800-10626200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr11:10622800-10632800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr11:10623000-10625600	Weak transcription	Lung	lung
32	chr11:10623000-10625800	Weak transcription	Brain Hippocampus Middle	brain
33	chr11:10623000-10629000	Weak transcription	Colonic Mucosa	Colon
34	chr11:10623400-10625600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr11:10623400-10635400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr11:10623600-10625600	Strong transcription	Stomach Smooth Muscle	stomach
37	chr11:10623800-10625600	Weak transcription	HSMMtube	muscle
38	chr11:10623800-10625800	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr11:10623800-10627400	Weak transcription	K562	blood
40	chr11:10624600-10625600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr11:10624600-10625600	Enhancers	HepG2	liver
42	chr11:10624800-10626200	Enhancers	Spleen	Spleen
43	chr11:10624800-10630000	Enhancers	Placenta Amnion	Placenta Amnion
44	chr11:10624800-10632800	Enhancers	Thymus	Thymus
45	chr11:10625000-10626200	Enhancers	Primary hematopoietic stem cells	blood
46	chr11:10625000-10626200	Enhancers	Esophagus	oesophagus
47	chr11:10625000-10627000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr11:10625000-10627600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr11:10625000-10627600	Strong transcription	Brain Substantia Nigra	brain
50	chr11:10625000-10629200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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