Variant report

Variant	rs11827743
Chromosome Location	chr11:10569653-10569654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11042886	0.81[EUR][1000 genomes]
rs12285938	0.81[EUR][1000 genomes]
rs12289747	0.81[EUR][1000 genomes]
rs16907941	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16907981	1.00[EUR][1000 genomes]
rs16907986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16908028	0.93[EUR][1000 genomes]
rs28526173	0.81[EUR][1000 genomes]
rs35296427	0.83[AMR][1000 genomes]
rs56245730	0.81[EUR][1000 genomes]
rs57197678	0.81[EUR][1000 genomes]
rs7101571	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7948666	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10566200-10572800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:10566600-10570600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:10568400-10569800	Weak transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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