Variant report

Variant	rs56245730
Chromosome Location	chr11:10605218-10605219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10604416..10607231-chr11:10624844..10627462,2	K562	blood:
2	chr11:10599184..10602109-chr11:10604361..10607201,2	K562	blood:
3	chr11:10595966..10597996-chr11:10604328..10606126,2	K562	blood:
4	chr11:10580566..10582619-chr11:10604705..10606286,2	K562	blood:
5	chr11:10603161..10605514-chr11:10605788..10607951,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11042886	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11827743	0.81[EUR][1000 genomes]
rs12285938	1.00[EUR][1000 genomes]
rs12289747	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16907981	0.81[EUR][1000 genomes]
rs16907986	0.81[EUR][1000 genomes]
rs28526173	1.00[EUR][1000 genomes]
rs57197678	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7101571	0.81[EUR][1000 genomes]
rs7948666	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10580600-10609800	Weak transcription	Thymus	Thymus
2	chr11:10586400-10620400	Weak transcription	Brain Anterior Caudate	brain
3	chr11:10590600-10605600	Weak transcription	NH-A	brain
4	chr11:10590600-10611200	Weak transcription	Pancreas	Pancrea
5	chr11:10590800-10608200	Weak transcription	NHDF-Ad	bronchial
6	chr11:10592000-10608000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:10592400-10622600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:10594400-10606000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:10595000-10629600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:10595000-10632800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:10595400-10615400	Weak transcription	Brain Angular Gyrus	brain
12	chr11:10595800-10608400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:10597200-10605600	Weak transcription	Colonic Mucosa	Colon
14	chr11:10597200-10625800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr11:10598000-10608200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:10598200-10605400	Weak transcription	Psoas Muscle	Psoas
17	chr11:10599000-10605800	Enhancers	Primary B cells from peripheral blood	blood
18	chr11:10600000-10606000	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr11:10600200-10606800	Enhancers	HUVEC	blood vessel
20	chr11:10600400-10605800	Genic enhancers	Stomach Smooth Muscle	stomach
21	chr11:10600400-10605800	Enhancers	Spleen	Spleen
22	chr11:10600400-10608000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:10601200-10605800	Enhancers	Placenta	Placenta
24	chr11:10601200-10606600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:10601200-10607000	Enhancers	Primary hematopoietic stem cells	blood
26	chr11:10601200-10611800	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr11:10601400-10608200	Weak transcription	Brain Hippocampus Middle	brain
28	chr11:10602200-10605800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:10602600-10605800	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr11:10602800-10608200	Weak transcription	NHLF	lung
31	chr11:10602800-10611400	Enhancers	K562	blood
32	chr11:10603000-10607000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr11:10603000-10609600	Weak transcription	Brain Substantia Nigra	brain
34	chr11:10603200-10613200	Weak transcription	Fetal Intestine Large	intestine
35	chr11:10603400-10605400	Weak transcription	Adipose Nuclei	Adipose
36	chr11:10603400-10605400	Weak transcription	Esophagus	oesophagus
37	chr11:10603400-10605400	Weak transcription	Fetal Heart	heart
38	chr11:10603400-10605600	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr11:10603600-10605800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:10603600-10606200	Weak transcription	NHEK	skin
41	chr11:10603600-10606600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:10603600-10607600	Weak transcription	Lung	lung
43	chr11:10603600-10608000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:10603600-10608000	Weak transcription	Fetal Muscle Trunk	muscle
45	chr11:10603600-10608200	Weak transcription	HMEC	breast
46	chr11:10603600-10614800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr11:10603600-10614800	Weak transcription	Fetal Intestine Small	intestine
48	chr11:10603600-10621800	Weak transcription	Brain Cingulate Gyrus	brain
49	chr11:10603800-10606400	Enhancers	Primary neutrophils fromperipheralblood	blood
50	chr11:10604000-10606600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links