Variant report

Variant	rs16908482
Chromosome Location	chr9:24543044-24543045
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr9:24542908-24543131	HepG2	liver:	n/a	chr9:24542993-24543004

Variant related genes	Relation type
ENSG00000269957	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10511742	1.00[CEU][hapmap]
rs1329848	0.80[EUR][1000 genomes]
rs1475672	0.80[EUR][1000 genomes]
rs16908486	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs16908488	1.00[CEU][hapmap]
rs16908493	0.92[EUR][1000 genomes]
rs16908496	0.92[EUR][1000 genomes]
rs16908502	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16908539	0.80[EUR][1000 genomes]
rs16908541	0.80[EUR][1000 genomes]
rs16908550	0.80[EUR][1000 genomes]
rs16908556	0.80[EUR][1000 genomes]
rs16908561	0.80[EUR][1000 genomes]
rs16908564	0.80[EUR][1000 genomes]
rs16908573	0.80[EUR][1000 genomes]
rs16908577	0.80[EUR][1000 genomes]
rs16908582	0.80[EUR][1000 genomes]
rs1813872	0.80[EUR][1000 genomes]
rs2014716	0.80[EUR][1000 genomes]
rs2225317	0.80[EUR][1000 genomes]
rs55841402	0.80[EUR][1000 genomes]
rs57263657	0.80[EUR][1000 genomes]
rs60464775	0.80[EUR][1000 genomes]
rs7032868	0.80[EUR][1000 genomes]
rs73652283	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73652297	1.00[EUR][1000 genomes]
rs73652302	0.84[EUR][1000 genomes]
rs73653933	0.80[EUR][1000 genomes]
rs73653934	0.80[EUR][1000 genomes]
rs73653937	0.80[EUR][1000 genomes]
rs7859588	0.80[EUR][1000 genomes]
rs9696309	0.80[EUR][1000 genomes]
rs9696831	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752290	chr9:24131800-24544900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv533263	chr9:24386546-24942407	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1032395	chr9:24396046-24945219	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv870357	chr9:24449398-24555784	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1027072	chr9:24459843-24554174	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv892801	chr9:24488294-24671257	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv831529	chr9:24495736-24635767	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1032945	chr9:24512538-24572818	Enhancers Weak transcription	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1029750	chr9:24531007-24657061	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links