Variant report

Variant	rs16908496
Chromosome Location	chr9:24552154-24552155
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DMRTA1-7	chr9:24551961-24552156	XLOC_007304

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs12115192	0.84[EUR][1000 genomes]
rs12115222	0.84[EUR][1000 genomes]
rs1329848	0.87[EUR][1000 genomes]
rs1475672	0.87[EUR][1000 genomes]
rs16908482	0.92[EUR][1000 genomes]
rs16908493	1.00[EUR][1000 genomes]
rs16908502	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16908537	0.80[EUR][1000 genomes]
rs16908539	0.87[EUR][1000 genomes]
rs16908541	0.87[EUR][1000 genomes]
rs16908545	0.84[EUR][1000 genomes]
rs16908550	0.87[EUR][1000 genomes]
rs16908556	0.87[EUR][1000 genomes]
rs16908561	0.87[EUR][1000 genomes]
rs16908564	0.87[EUR][1000 genomes]
rs16908573	0.87[EUR][1000 genomes]
rs16908577	0.87[EUR][1000 genomes]
rs16908582	0.87[EUR][1000 genomes]
rs16908586	0.84[EUR][1000 genomes]
rs16908593	0.84[EUR][1000 genomes]
rs16908596	0.84[EUR][1000 genomes]
rs16908600	0.84[EUR][1000 genomes]
rs16908604	0.84[EUR][1000 genomes]
rs16908610	0.84[EUR][1000 genomes]
rs16908626	0.84[EUR][1000 genomes]
rs16908629	0.84[EUR][1000 genomes]
rs16908636	0.84[EUR][1000 genomes]
rs16908639	0.84[EUR][1000 genomes]
rs16908644	0.84[EUR][1000 genomes]
rs16908647	0.84[EUR][1000 genomes]
rs1813872	0.87[EUR][1000 genomes]
rs2014716	0.87[EUR][1000 genomes]
rs2225317	0.87[EUR][1000 genomes]
rs4416915	0.84[EUR][1000 genomes]
rs4484783	0.84[EUR][1000 genomes]
rs55841402	0.87[EUR][1000 genomes]
rs57263657	0.87[EUR][1000 genomes]
rs59984102	0.84[EUR][1000 genomes]
rs60464775	0.87[EUR][1000 genomes]
rs7032868	0.87[EUR][1000 genomes]
rs7032913	0.80[EUR][1000 genomes]
rs7041483	0.84[EUR][1000 genomes]
rs73652283	0.92[EUR][1000 genomes]
rs73652297	0.92[EUR][1000 genomes]
rs73652302	0.91[EUR][1000 genomes]
rs73653933	0.87[EUR][1000 genomes]
rs73653934	0.87[EUR][1000 genomes]
rs73653937	0.87[EUR][1000 genomes]
rs73653950	0.84[EUR][1000 genomes]
rs73653951	0.84[EUR][1000 genomes]
rs73655209	0.84[EUR][1000 genomes]
rs7859588	0.87[EUR][1000 genomes]
rs9696309	0.87[EUR][1000 genomes]
rs9696831	0.87[EUR][1000 genomes]
rs991798	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533263	chr9:24386546-24942407	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1032395	chr9:24396046-24945219	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv870357	chr9:24449398-24555784	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1027072	chr9:24459843-24554174	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv892801	chr9:24488294-24671257	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv831529	chr9:24495736-24635767	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1032945	chr9:24512538-24572818	Enhancers Weak transcription	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1029750	chr9:24531007-24657061	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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