Variant report

Variant	rs16908502
Chromosome Location	chr9:24552668-24552669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10511742	1.00[CEU][hapmap]
rs1329848	0.80[EUR][1000 genomes]
rs1475672	0.80[EUR][1000 genomes]
rs16908482	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16908486	1.00[CEU][hapmap]
rs16908488	1.00[CEU][hapmap]
rs16908493	0.92[EUR][1000 genomes]
rs16908496	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16908539	0.80[EUR][1000 genomes]
rs16908541	0.80[EUR][1000 genomes]
rs16908550	0.80[EUR][1000 genomes]
rs16908556	0.80[EUR][1000 genomes]
rs16908561	0.80[EUR][1000 genomes]
rs16908564	0.80[EUR][1000 genomes]
rs16908573	0.80[EUR][1000 genomes]
rs16908577	0.80[EUR][1000 genomes]
rs16908582	0.80[EUR][1000 genomes]
rs1813872	0.80[EUR][1000 genomes]
rs2014716	0.80[EUR][1000 genomes]
rs2225317	0.80[EUR][1000 genomes]
rs55841402	0.80[EUR][1000 genomes]
rs57263657	0.80[EUR][1000 genomes]
rs60464775	0.80[EUR][1000 genomes]
rs7032868	0.80[EUR][1000 genomes]
rs73652283	1.00[EUR][1000 genomes]
rs73652297	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73652302	0.84[EUR][1000 genomes]
rs73653933	0.80[EUR][1000 genomes]
rs73653934	0.80[EUR][1000 genomes]
rs73653937	0.80[EUR][1000 genomes]
rs7859588	0.80[EUR][1000 genomes]
rs9696309	0.80[EUR][1000 genomes]
rs9696831	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533263	chr9:24386546-24942407	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1032395	chr9:24396046-24945219	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv870357	chr9:24449398-24555784	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1027072	chr9:24459843-24554174	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv892801	chr9:24488294-24671257	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv831529	chr9:24495736-24635767	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1032945	chr9:24512538-24572818	Enhancers Weak transcription	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1029750	chr9:24531007-24657061	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:24552600-24553000	Enhancers	Fetal Kidney	kidney

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