Variant report

Variant	rs16909728
Chromosome Location	chr9:96974302-96974303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1421139	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16909702	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs60658774	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73653440	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73653443	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73653444	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73653445	0.83[AFR][1000 genomes]
rs73653446	0.83[AFR][1000 genomes]
rs73653447	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73653451	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7466359	1.00[YRI][hapmap];0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
2	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases
3	esv3394266	chr9:96935210-97045514	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	195 gene(s)	inside rSNPs	diseases
4	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96973000-96975400	Enhancers	Placenta	Placenta
2	chr9:96974000-96974600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:96974000-96975000	Enhancers	K562	blood
4	chr9:96974000-96975600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr9:96974000-96975600	Weak transcription	HMEC	breast
6	chr9:96974200-96975400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:96974200-96975600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:96974200-96976000	Weak transcription	Brain Cingulate Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links