Variant report

Variant	rs73653443
Chromosome Location	chr9:96936116-96936117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:28)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:28 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:96935497-96946284	HepG2	liver:	n/a	n/a
2	NFATC1	chr9:96935801-96936334	GM12878	blood:	n/a	n/a
3	BATF	chr9:96935987-96936280	GM12878	blood:	n/a	n/a
4	POLR2A	chr9:96936004-96936369	K562	blood:	n/a	n/a
5	EBF1	chr9:96935941-96936347	GM12878	blood:	n/a	n/a
6	WRNIP1	chr9:96935907-96936314	GM12878	blood:	n/a	n/a
7	POLR2A	chr9:96935486-96946923	K562	blood:	n/a	n/a
8	BCLAF1	chr9:96935917-96936439	GM12878	blood:	n/a	n/a
9	POLR2A	chr9:96935500-96945447	A549	lung:	n/a	n/a
10	IRF4	chr9:96935889-96936366	GM12878	blood:	n/a	n/a
11	POLR2A	chr9:96935876-96937309	K562	blood:	n/a	n/a
12	IKZF1	chr9:96935991-96936235	GM12878	blood:	n/a	n/a
13	POLR2A	chr9:96935709-96937156	Hela-S3	cervix:	n/a	n/a
14	ATF2	chr9:96935712-96936299	GM12878	blood:	n/a	n/a
15	POLR2A	chr9:96935904-96937225	GM12892	blood:	n/a	n/a
16	POLR2A	chr9:96935443-96937418	GM12878	blood:	n/a	n/a
17	POLR2A	chr9:96935326-96937156	GM12878	blood:	n/a	n/a
18	POLR2A	chr9:96935994-96937019	GM12878	blood:	n/a	n/a
19	POLR2A	chr9:96935918-96936220	K562	blood:	n/a	n/a
20	BATF	chr9:96935789-96936370	GM12878	blood:	n/a	n/a
21	RUNX3	chr9:96935825-96936426	GM12878	blood:	n/a	n/a
22	BCL11A	chr9:96935943-96936278	GM12878	blood:	n/a	n/a
23	POLR2A	chr9:96935811-96936332	MCF-7	breast:	n/a	n/a
24	POLR2A	chr9:96935872-96936373	PFSK-1	brain:	n/a	n/a
25	ATF2	chr9:96935841-96936450	GM12878	blood:	n/a	n/a
26	POLR2A	chr9:96935940-96937352	GM12892	blood:	n/a	n/a
27	NFIC	chr9:96935844-96936396	GM12878	blood:	n/a	n/a
28	RUNX3	chr9:96935827-96936372	GM12878	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:96902444..96903976-chr9:96934492..96936431,2	K562	blood:
2	chr9:96873193..96875324-chr9:96934781..96937611,2	K562	blood:
3	chr9:96934105..96937234-chr9:96943114..96945589,3	MCF-7	breast:

No data

Variant related genes	Relation type
MIRLET7A1	TF binding region
MIRLET7D	TF binding region
ENSG00000269929	TF binding region
MIRLET7F1	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1421139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16909702	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16909728	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60658774	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73653440	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73653444	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73653447	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73653451	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
2	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases
3	esv3394266	chr9:96935210-97045514	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	195 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96929600-96936400	Weak transcription	Gastric	stomach
2	chr9:96929600-96938800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:96929800-96944800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:96929800-96948400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:96930000-96936200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr9:96930400-96938200	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr9:96930600-96937600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr9:96930600-96943600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:96930600-96943800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr9:96931000-96937200	Enhancers	Fetal Heart	heart
11	chr9:96931200-96936400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr9:96931200-96938200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr9:96931200-96938800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr9:96931400-96965600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr9:96931800-96939000	Weak transcription	Fetal Brain Male	brain
16	chr9:96932000-96936400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:96932000-96938200	Enhancers	Brain Anterior Caudate	brain
18	chr9:96932400-96938000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr9:96932600-96936400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:96932800-96937800	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr9:96933400-96936800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:96933400-96937000	Enhancers	Right Atrium	heart
23	chr9:96933400-96939000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr9:96933600-96939400	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr9:96933600-96939800	Strong transcription	Hela-S3	cervix
26	chr9:96933800-96937600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr9:96933800-96940400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr9:96934000-96938200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr9:96934000-96941800	Strong transcription	Dnd41	blood
30	chr9:96934200-96939600	Enhancers	Brain Substantia Nigra	brain
31	chr9:96934200-96939800	Genic enhancers	Osteobl	bone
32	chr9:96934200-96941000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr9:96934400-96937000	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
34	chr9:96934400-96939800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr9:96934400-96942400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr9:96934600-96938400	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr9:96934800-96938200	Weak transcription	Fetal Brain Female	brain
38	chr9:96934800-96938200	Genic enhancers	NHDF-Ad	bronchial
39	chr9:96935000-96937000	Enhancers	Right Ventricle	heart
40	chr9:96935000-96937600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr9:96935000-96938200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr9:96935000-96939600	Genic enhancers	HUVEC	blood vessel
43	chr9:96935000-96939800	Genic enhancers	A549	lung
44	chr9:96935200-96936200	Genic enhancers	Muscle Satellite Cultured Cells	--
45	chr9:96935200-96936600	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr9:96935200-96936600	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr9:96935200-96937000	Genic enhancers	Left Ventricle	heart
48	chr9:96935200-96937000	Genic enhancers	Sigmoid Colon	Sigmoid Colon
49	chr9:96935200-96937200	Genic enhancers	Primary T cells fromperipheralblood	blood
50	chr9:96935200-96937400	Genic enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links