Variant report

Variant	rs73653440
Chromosome Location	chr9:96920116-96920117
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96917519..96921263-chr9:96921727..96924790,3	MCF-7	breast:
2	chr9:96912919..96916926-chr9:96917380..96923023,7	K562	blood:
3	chr9:96918061..96921020-chr9:96938422..96940246,2	MCF-7	breast:
4	chr9:96911035..96912883-chr9:96918874..96920896,2	MCF-7	breast:
5	chr9:96905504..96908787-chr9:96918594..96920364,3	MCF-7	breast:
6	chr9:96900977..96902501-chr9:96919516..96921302,2	K562	blood:

Variant related genes	Relation type
ENSG00000269929	Chromatin interaction
ENSG00000199072	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1421139	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16909702	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16909728	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60658774	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73653443	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73653444	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73653447	1.00[AMR][1000 genomes]
rs73653451	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
2	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96904000-96927200	Weak transcription	Thymus	Thymus
2	chr9:96914000-96921000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:96914000-96921400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:96914200-96921400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:96918400-96920400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr9:96918400-96921600	Enhancers	Primary hematopoietic stem cells	blood
7	chr9:96918800-96920400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr9:96918800-96920600	Enhancers	Brain Anterior Caudate	brain
9	chr9:96918800-96922400	Enhancers	HepG2	liver
10	chr9:96919000-96920200	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr9:96919000-96920200	Enhancers	NH-A	brain
12	chr9:96919000-96920800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:96919000-96922400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr9:96919200-96924000	Enhancers	Placenta Amnion	Placenta Amnion
15	chr9:96919400-96921400	Weak transcription	Aorta	Aorta
16	chr9:96919400-96921400	Weak transcription	Brain Angular Gyrus	brain
17	chr9:96919400-96921600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:96919400-96921600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr9:96919400-96921600	Weak transcription	NHLF	lung
20	chr9:96919400-96925800	Weak transcription	Spleen	Spleen
21	chr9:96919400-96927600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr9:96919400-96927800	Weak transcription	Psoas Muscle	Psoas
23	chr9:96919600-96920200	Enhancers	A549	lung
24	chr9:96919600-96920800	Weak transcription	Placenta	Placenta
25	chr9:96919600-96921400	Weak transcription	HSMM	muscle
26	chr9:96919600-96921400	Weak transcription	HSMMtube	muscle
27	chr9:96919600-96921600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr9:96919600-96921600	Weak transcription	Fetal Lung	lung
29	chr9:96919600-96921600	Weak transcription	Osteobl	bone
30	chr9:96919600-96922000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr9:96919600-96922000	Weak transcription	Rectal Smooth Muscle	rectum
32	chr9:96919600-96922800	Weak transcription	Esophagus	oesophagus
33	chr9:96919600-96926000	Weak transcription	Primary T cells from cord blood	blood
34	chr9:96919600-96927800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr9:96919600-96927800	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr9:96919800-96920800	Enhancers	K562	blood
37	chr9:96919800-96921400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr9:96919800-96921400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr9:96919800-96921600	Weak transcription	Fetal Heart	heart
40	chr9:96919800-96927200	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr9:96920000-96921000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr9:96920000-96921000	Weak transcription	Fetal Stomach	stomach
43	chr9:96920000-96921400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr9:96920000-96921400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr9:96920000-96921400	Weak transcription	Adipose Nuclei	Adipose
46	chr9:96920000-96921400	Weak transcription	Brain Cingulate Gyrus	brain
47	chr9:96920000-96921400	Weak transcription	Brain Hippocampus Middle	brain
48	chr9:96920000-96921400	Weak transcription	Brain Substantia Nigra	brain
49	chr9:96920000-96921400	Weak transcription	Colon Smooth Muscle	Colon
50	chr9:96920000-96921600	Weak transcription	Muscle Satellite Cultured Cells	--

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