Variant report

Variant	rs16912546
Chromosome Location	chr11:94077030-94077031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12417810	0.86[CHD][hapmap];0.92[JPT][hapmap]
rs13447691	0.87[AMR][1000 genomes]
rs16920277	1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs16920467	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs2096708	0.98[ASN][1000 genomes]
rs3740864	0.86[CHD][hapmap];0.83[JPT][hapmap]
rs3740865	1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs3740866	0.86[CHD][hapmap];0.92[JPT][hapmap]
rs4753575	0.94[ASN][1000 genomes]
rs4753590	0.91[ASN][1000 genomes]
rs58325808	0.83[ASN][1000 genomes]
rs59861532	0.83[ASN][1000 genomes]
rs60145527	0.83[ASN][1000 genomes]
rs60392353	0.83[ASN][1000 genomes]
rs60396344	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7924609	0.86[CHD][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523083	chr11:93962121-94150790	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv832233	chr11:93981434-94158471	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94077000-94077600	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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