Variant report

Variant	rs59861532
Chromosome Location	chr11:94124360-94124361
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12417543	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13447691	0.92[ASN][1000 genomes]
rs13447768	0.96[EUR][1000 genomes]
rs16912546	0.83[ASN][1000 genomes]
rs16920237	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16920277	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16920467	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2000703	0.92[ASN][1000 genomes]
rs2096708	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3740864	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3740865	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740866	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4753140	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4753575	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4753590	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4753606	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57646575	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58325808	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60145527	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60392353	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60396344	0.96[ASN][1000 genomes]
rs7114605	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7924609	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523083	chr11:93962121-94150790	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv832233	chr11:93981434-94158471	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94119600-94132400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:94124000-94128600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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