Variant report

Variant	rs16920277
Chromosome Location	chr11:94129042-94129043
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12417543	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12417810	1.00[JPT][hapmap]
rs13447691	0.94[ASN][1000 genomes]
rs13447768	0.96[EUR][1000 genomes]
rs16912546	0.82[ASN][1000 genomes]
rs16920237	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16920467	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2000703	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2096708	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3740864	0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3740865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3740866	1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4753140	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4753575	0.87[AMR][1000 genomes]
rs4753590	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4753606	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57646575	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58325808	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59861532	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60145527	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60392353	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60396344	0.94[ASN][1000 genomes]
rs7114605	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7924609	1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523083	chr11:93962121-94150790	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv832233	chr11:93981434-94158471	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94119600-94132400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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